BAC Information

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BAC

Clone NameMSMg01-232J03
Chromosome8 (Build37)
Map Location 91,153,932 - 91,154,437
singlet/doubletsinglet
Overlap gene9130017C17Rik
Upstream geneZfp423, LOC100040328, 5033428A16Rik, Heatr3, Papd5, Adcy7, Brd7, LOC100040369, Nkd1
Downstream geneNod2, Cyld, LOC675985, Sall1, LOC100041089, EG625801, EG384862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232J03.T7 (MSMg01no232_j03.b1)MSMg01-232J03.TJ (MSMg01no232_j03.g1)
ACCAG399034AG399035
length760731
length of high quality
(start - end)
374 (128 - 501)506 (75 - 580)
definitionCHROMAT_FILE: MSMg01no232_j03.b1 PHD_FILE: MSMg01no232_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:05 2005CHROMAT_FILE: MSMg01no232_j03.g1 PHD_FILE: MSMg01no232_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGGTCCTCTGGCAGAGCAGCGTGTCCTTAACCACTGAGCCATCTC
TCCAGCCACATTGGACACCTTCCTCCTGAGGTCTACTCCTACCTTTTCCT
CTAGCAGCTTTGGCGTTTAGGGTCTTATGCTAAAGCCTTTGATCTGTTTG
GAGTTGACTTTTACACTCAGGAAGAGACGACCTGGTTTAATTTTTCTAAA
TGTAGATGTCTGGTTTTCCCAGCAGTACTTATTGATGATGCTGTCTTTTC
TCCAATGTGTATTTTTGGCATCTTTGTAAAAAATCGGGTAGCTGAAATTG
GATGCTTTGTGTCTGGTTCCCCGATTCTCTCCCACTGACTGATCTTTGCA
TCTGTTTTTGAGCCACTTTGTGCTATTTTCATTATTGTGGTTCTGTAGTA
CAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAATGTGTGTATG
TGTGCGCCTTCTCCCCTCCCCTTCTTTCCCTTTCCTTCTTCCTTTTTCAC
TTCCTTACTTCCTTCCTTTCCCCTTTCCCCTCGCCTCTTTTTTTTTTCCC
TTCCTTCCCCCCCCTTTTTTCCCCCTTTTCTTTTCCTCCCTTTCCTTCCT
TCTCTTTTCTCCTTCCGCCCCTCCCTTCCCTTCCCTTCCCTTTCCCTCCC
TTTCCCTTTTTCTTCCCTTTCCTCCTCCCCTTTTTCCCCCCTTTTTCCCC
CCTTTCTTTC
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTCCCAATTCAGAGCCGAGAAAGGCAGCTGCACCCTG
AGATAAAGTGTTTGTGTAGTCAGACCCTCCCAGGCTCAGGCTGAAATACG
ACTTCCTCAGGGCTTCCCCTGCACACTGATGTGCCCTAAGGAGCTCCATG
GCCCCAAGTCAGTGCCCTAGGGAGTACATGGGTGTGGGCCCTGCTTGGCA
GGAGCACATGATTACAAAATGGTCCATCAGCAGGCCGGATGTGTACAGAC
TGGATCCTACCCCACAGTGCACTTCATAATAATAAGAAGCAGTCGGAGTG
TTGGATTGAGGTCAATACACAAGGTAGTTTCACAGGGGTCTAGCTGATGT
CCCCACAGGGAGGGTGGCAGGAACGGATAGATAAACTCTTCCAGAACTCT
GATATCCATTCCATCCCACGCCTCCAGTCATCTCCTTCCATCCCTGGCCT
GCAGGGCACTTCAGAATACAGATTCTTTAAAGGCAATGTCTTTCCAGAAG
CCCAAGATGGCCCCAGCTCTAACTCCAGCATGACCACAAGGGAACTCCAG
GAACACTGGCATAAGGAGAAGAGCCGCTGGAAACATGTCAGGCTGCTCTT
TGAGATCGCCTCAGCCCGCATAGAGGAGAGGAAAGTCTCCAAGTTTGTGG
CAAGCACAGCTTATAATGAGGGGGCTCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_j03.g1 MSMg01no232_j03.g1 CHROMAT_FILE:
MSMg01no232_j03.g1 PHD_FILE: MSMg01no232_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:05 2005
         (506 letters)



>mm_chr8_91153732_91154637
          Length = 906

 Score =  963 bits (498), Expect = 0.0
 Identities = 504/506 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagccgagaaaggcagctgcaccctgagataaagtgtttgtgtagtcagaccctcccagg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 706 gagccgagaaaggcagctgcaccctgagataaagtgtttgtgtagtcagagcctcccagg 647

                                                                       
Query: 61  ctcaggctgaaatacgacttcctcagggcttcccctgcacactgatgtgccctaaggagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ctcaggctgaaatacgacttcctcagggcttcccctgcacactgatgtgccctaaggagc 587

                                                                       
Query: 121 tccatggccccaagtcagtgccctagggagtacatgggtgtgggccctgcttggcaggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tccatggccccaagtcagtgccctagggagtacatgggtgtgggccctgcttggcaggag 527

                                                                       
Query: 181 cacatgattacaaaatggtccatcagcaggccggatgtgtacagactggatcctacccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 cacatgattacaaaatggtccatcagcaggccggatgtgtacagactggatcctacccca 467

                                                                       
Query: 241 cagtgcacttcataataataagaagcagtcggagtgttggattgaggtcaatacacaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 cagtgcacttcataataataagaagcagtcggagtgttggattgaggtcaatacacaagg 407

                                                                       
Query: 301 tagtttcacaggggtctagctgatgtccccacagggagggtggcaggaacggatagataa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 406 tagtttcacaggggtctagctgatgtccccacagggagggtggcaggaagggatagataa 347

                                                                       
Query: 361 actcttccagaactctgatatccattccatcccacgcctccagtcatctccttccatccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 actcttccagaactctgatatccattccatcccacgcctccagtcatctccttccatccc 287

                                                                       
Query: 421 tggcctgcagggcacttcagaatacagattctttaaaggcaatgtctttccagaagccca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tggcctgcagggcacttcagaatacagattctttaaaggcaatgtctttccagaagccca 227

                                     
Query: 481 agatggccccagctctaactccagca 506
           ||||||||||||||||||||||||||
Sbjct: 226 agatggccccagctctaactccagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)