Query= MSMg01no232_n15.b1 MSMg01no232_n15.b1 CHROMAT_FILE:
MSMg01no232_n15.b1 PHD_FILE: MSMg01no232_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:26 2005
(651 letters)
>mm_chr8_99317101_99318153
Length = 1053
Score = 911 bits (471), Expect = 0.0
Identities = 495/509 (97%), Gaps = 12/509 (2%)
Strand = Plus / Minus
Query: 147 atgttctagcatctttggtacaggaaggtgctctgtacactatcaaaagataaacataaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1053 atgttctagcatctttggtacaggaaggtgctctgtacactatcaaaagataaacataaa 994
Query: 207 taccaagacagatgataacattttttgcctgcaagatatgctagggcaatggtggcataa 266
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 993 taccaagacagatgataacattttttgcctgcaagatatgctagggcaagggtggcataa 934
Query: 267 aactgtgagagtaaccaaccaatatataatttaacttaaggcttactccatgatattgaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 933 aactgtgagagtaaccaaccaatatataatttaacttaaggcttactccatgagattgaa 874
Query: 327 accatatgtgacactgcatgggttatgacagactctgagagtctacccccc-----atat 381
||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 873 accatatgtgacactgcatgggttatgacagactctgagagtcta-----ctttttatat 819
Query: 382 tttgagccaaccaagcatatataagtacatactaaccaaagaaggtttctcaaaattaaa 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 tttgagccaaccaagcatatataagtacatactaaccaaagaaggtttctcaaaattaaa 759
Query: 442 attatttgtgtatgtttagtag--tatatatatcaatgttctcattgctgtgattgaaaa 499
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 758 attatttgtgtatgtttagtagtatatatatatcaatgttctcattgctgtgattgaaaa 699
Query: 500 gaaatattactatatatacatggaaggaggagggaaaggaatgtacaacaccttggtgac 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gaaatattactatatatacatggaaggaggagggaaaggaatgtacaacaccttggtgac 639
Query: 560 agagtacagcatttgctattgttagattttgtttcatgggaacagtgaggtttatttttt 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 agagtacagcatttgctattgttagattttgtttcatgggaacagtgaggtttatttttt 579
Query: 620 ttccacaaagaataaaagatgttttgaga 648
|||||||||||||||||||||||||||||
Sbjct: 578 ttccacaaagaataaaagatgttttgaga 550
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1053
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1043
Effective search space: 668563
Effective search space used: 668563
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no232_n15.g1 MSMg01no232_n15.g1 CHROMAT_FILE:
MSMg01no232_n15.g1 PHD_FILE: MSMg01no232_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:26 2005
(269 letters)
>mm_chr8_99195817_99196484
Length = 668
Score = 476 bits (246), Expect = e-139
Identities = 258/262 (98%), Gaps = 1/262 (0%)
Strand = Plus / Plus
Query: 8 tgttttataaattttaagattttgcttcccatggttttctgtgttttcccttgattttct 67
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 208 tgttttataaattttaagattttgctttccatggttttctgtgctttcccttgattttct 267
Query: 68 gtgcagttgacacattagtttacctgagagctgatatagtttaccttctactagttgaaa 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gtgcagttgacacattagtttacctgagagctgatatagtttaccttctactagttgaaa 327
Query: 128 agaggtgagtggttctctttgcaaacttgggagtaacctaccttcctaagatctgttgta 187
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 a-aggtgagtggttctctttgcaaacttgggagtaacctaccttcctaagatctgttgta 386
Query: 188 tctgaacttttggatactttctggattccttttccttatacccttctccacccctcgtct 247
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gctgaacttttggatactttctggattccttttccttatacccttctccacccctcgtct 446
Query: 248 tcacttttaaccccttaacact 269
||||||||||||||||||||||
Sbjct: 447 tcacttttaaccccttaacact 468
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 668
Length adjustment: 9
Effective length of query: 260
Effective length of database: 659
Effective search space: 171340
Effective search space used: 171340
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
