BAC Information

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BAC

Clone NameMSMg01-233F13
Chromosome8 (Build37)
Map Location 62,393,244 - 62,393,472
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665116, LOC436042
Downstream geneAadat, Mfap3l, LOC100040679, 2700029M09Rik, Clcn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233F13.T7 (MSMg01no233_f13.b1)MSMg01-233F13.TJ (MSMg01no233_f13.g1)
ACCAG399583AG399584
length743732
length of high quality
(start - end)
238 (46 - 283)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no233_f13.b1 PHD_FILE: MSMg01no233_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:02 2005CHROMAT_FILE: MSMg01no233_f13.g1 PHD_FILE: MSMg01no233_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTACTTATTTTTAGAGTTTTCGAACTATTTCCTCATAGCACCTA
TTGAGAACATAAGAATTATGCTTATTTTGATTTTAGAAAAGAGTGTGAAA
ATATTGGTATTGCATATTAACAATCCAACTTTCTGTTGCCCCAACCTAAA
TAAAATTGATTACTTGGAAAATTAAAAACATGTTCTTCCTCCTTAAATGA
GAGTTAAGGTGTTCTGTGTTCTTGGAGATGTATATCAGTCAACCCACCTA
CAGCTCCCTATATCGATCGTCACTGACTTAGGTCACAGTTAACACCACTA
CCCTAATCAACTGAACTTTAAACGCCAAAGAAAAAATTTTCTAAGGTTTG
ACCCTGACCCTCCCCCTTCAAAAAGATTTTGGAAAAAATTTCTCCCGAAG
TTAATCCCGGGGTTTATAAAAACACCCCCAGCTTATTTGCTTTTTTTTCT
TTAAACCCTCTCTCTAAACAATAGGTGTTATTTTTTCCCCAAACTTTTCT
TTTTTTTTCTCCACAACCCCCCTATTTTATATTTCTCTTAACACATTATA
CATTATTTTCTTCTCCTCTCTCTTTCCCTCCTTTCCCCCTTTATCCCATA
AAAAAACTCTCCTTCTTTCATTTCCTCTCCCCCCTCCTTTTTCAATTATA
ATTAATGATAACTCCGCCTCTCTATTTGTCTTCCTTTCCTCTN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCT
GAGAAGCACCTGAAAAAAATGTTCAGCATGCTTAATCATCAGAGAAATGC
AAATCAAAACAACATTGAGACTCCACCTCACAACAGTCAGAATGGCTAAG
ATCAAAAATTGAGGTGACAGCAGATGCTGGAGAGGATGTGGAGAAAGAGG
AACACCCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGA
AATCAGTCTGGCGGTTCCCCGGAAAATTGGACATAGTACTACCGGAGGAT
CCCGCAATACCTCNCTTGCCCCTATCTNNCCAAGATGTCCCAAGCAGTGA
GAAGGACACATGCTCCACTATGTTCATAGAAAACTTATTTATAATAGCCA
GAAGCTGGAAAAAACCCAGATGCCCCTCAACAGAGGAATAGATACAAAAA
AATGTGTATCCATGGAGTACTACTCAGCTATTAAAAGGAATGAATTTATG
AAATTCCTAGGCAAATGGTTGGACCTGGAGGACATCATCCTGAGTGAGGT
AACACAATCACAAAAGAACTCAAAAGATATGTACTCACCGATAAGTGGAT
ATTAGCCCAGAACCTTAATATACCCAAGATATAAGATTCAATTTGCAAAA
CACATGAGACTGAAGAAGAACGAAGACCACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_f13.b1 MSMg01no233_f13.b1 CHROMAT_FILE:
MSMg01no233_f13.b1 PHD_FILE: MSMg01no233_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:02 2005
         (238 letters)



>mm_chr8_62393041_62393678
          Length = 638

 Score =  435 bits (225), Expect = e-126
 Identities = 228/229 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcattacttatttttagagttttcgaactatttcctcatagcacctattgagaac 63
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 432 ggaattcattacttatttttagagttttcgaactatttccttatagcacctattgagaac 373

                                                                       
Query: 64  ataagaattatgcttattttgattttagaaaagagtgtgaaaatattggtattgcatatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ataagaattatgcttattttgattttagaaaagagtgtgaaaatattggtattgcatatt 313

                                                                       
Query: 124 aacaatccaactttctgttgccccaacctaaataaaattgattacttggaaaattaaaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aacaatccaactttctgttgccccaacctaaataaaattgattacttggaaaattaaaaa 253

                                                            
Query: 184 catgttcttcctccttaaatgagagttaaggtgttctgtgttcttggag 232
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 catgttcttcctccttaaatgagagttaaggtgttctgtgttcttggag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)