BAC Information

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BAC

Clone NameMSMg01-233G09
Chromosome8 (Build37)
Map Location 113,149,022 - 113,279,961
singlet/doubletdoublet
Overlap geneVac14, BC060632, 2010004A03Rik
Upstream genePkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, Hydin, LOC672398
Downstream geneSf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233G09.T7 (MSMg01no233_g09.b1)MSMg01-233G09.TJ (MSMg01no233_g09.g1)
ACCAG399616AG399617
length712690
length of high quality
(start - end)		312 (45 - 356)619 (72 - 690)
definitionCHROMAT_FILE: MSMg01no233_g09.b1 PHD_FILE: MSMg01no233_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:06 2005CHROMAT_FILE: MSMg01no233_g09.g1 PHD_FILE: MSMg01no233_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,149,022 - 113,149,330)(113,279,343 - 113,279,961)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAAAAGCCTATCAATGTGGTGCCCTTTGAGAACCCAGGCAAAGTTA
GGTACCAGAGCTCTGAGTGCTACTCACATAATTGGAGTTCCTGGGCATGG
CCTAGAGTGGTTTGAGGCAATTTGTGGAGTTTGGAGTTTGGGCTCAGTCC
TGCTGTTCATAAGCAGATTGCTTAGACCTGGGGTCAGAGGCTGGTGCTTG
CTACGTTCTGCCTACAGACTGTTCTGGTCTGAATCTCAGAGCAAGTTCAC
GATGAAATTTGAGTTTCTGTAGAGTTATGGCTGGGGGTGCCACATTCCTG
TTCAACAATATTCAACCCCTCTCCACCATCCTGCTGGCATGCTCACCAAG
GCTTCCCACACCAGTACCCCCACTGGCTTTGTTTGACTCCCCTGTCTACC
CACTGTGAAGATTGCCTTTTGTTTTTATGTTTTTGAAACAGGGTTACTCT
GTGTAGCTCTGGCTGTCCTGGAACTCATTCTGTAGACCAGGCTGGCCTCA
AACTTAGAGATCTGCCTGCCTCTGCTTCCCAAGTGCTGGGATTAAAAGTG
TGCACTCTTGCCACCCAGCAAAGATTACATGTGTGACTTCTGGTTGAATG
TCTCTGTGCCTTGGCTTACTGTTTGTTTGTTTGTTTGTTTGTTTGTTTAC
TTATTTATTTAT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTCACCGAAAATCAGATTAAACCGGCCCCATCAGCTCTTCC
CTGGCTGGGGACACAGACCGCTGACAGGAAGGAACTAAACGGCAGTGACA
CAAGGTGGAACACCTTCCACTCCATAACCTCCCCTGAAGCATGTAGGACT
TGGATTTGACCTGGCACTTCACCTCCTCCAGGCAGCCGTCCTAGCTTGTG
GGCTCTGCTGCTTCTCCTTTTAGTCCCAGCTCAAGGCTGCCAGGCTGACT
TGGGAGACTCACTCTTTTTTTGGCTCCAGGCAGCCACCGAGGTGCCTTGG
AGTCCTTTCTTGTGCGTGAAGACAGGGTTGGGTGTCTCCGTGGGCACGGT
GGGTCTTCCTTTCCTGGCTGGTGGCTGAGTGGCAGCGGATGCTCTTACAT
AATCAGTCTCTCTCTCCTCCTTCTTTTTCCAGAGCTAGACTTCACGCTGA
GCAGCTGCAGCCGAAGAAACCAGAGAAAGCGCCACCCAGCCCCAGATTCC
AAGAGGCCTGCCTGCTGGGGACTCCCTTCTCTTCTTCCTCCTCCTCCTCT
TCCTCCTCCTGAGACCCTCAAAGTCACTGTCTCACACCAGTTCCTGAGCT
GCAATGGGACTGGCAGCCACCGCCCCCTGGCTGTCCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_g09.b1 MSMg01no233_g09.b1 CHROMAT_FILE:
MSMg01no233_g09.b1 PHD_FILE: MSMg01no233_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:06 2005
         (312 letters)



>mm_chr8_113148819_113149530
          Length = 712

 Score =  598 bits (309), Expect = e-175
 Identities = 309/309 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctaaaagcctatcaatgtggtgccctttgagaacccaggcaaagttaggtacca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctaaaagcctatcaatgtggtgccctttgagaacccaggcaaagttaggtacca 263

                                                                       
Query: 64  gagctctgagtgctactcacataattggagttcctgggcatggcctagagtggtttgagg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gagctctgagtgctactcacataattggagttcctgggcatggcctagagtggtttgagg 323

                                                                       
Query: 124 caatttgtggagtttggagtttgggctcagtcctgctgttcataagcagattgcttagac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caatttgtggagtttggagtttgggctcagtcctgctgttcataagcagattgcttagac 383

                                                                       
Query: 184 ctggggtcagaggctggtgcttgctacgttctgcctacagactgttctggtctgaatctc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctggggtcagaggctggtgcttgctacgttctgcctacagactgttctggtctgaatctc 443

                                                                       
Query: 244 agagcaagttcacgatgaaatttgagtttctgtagagttatggctgggggtgccacattc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agagcaagttcacgatgaaatttgagtttctgtagagttatggctgggggtgccacattc 503

                    
Query: 304 ctgttcaac 312
           |||||||||
Sbjct: 504 ctgttcaac 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no233_g09.g1 MSMg01no233_g09.g1 CHROMAT_FILE:
MSMg01no233_g09.g1 PHD_FILE: MSMg01no233_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:06 2005
         (619 letters)



>mm_chr8_113279259_113280277
          Length = 1019

 Score = 1127 bits (583), Expect = 0.0
 Identities = 610/619 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagattaaaccggccccatcagctcttccctggctggggacacagaccgctgacaggaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||
Sbjct: 703 cagattaaaccggccccatcagctcttccctggctggggacacagatgggtgacaggaag 644

                                                                       
Query: 61  gaactaaacggcagtgacacaaggtggaacaccttccactccataacctcccctgaagca 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 643 gaactaaacggcagtgacacaaggtggaacaccttccactccatagcctcccctgaagca 584

                                                                       
Query: 121 tgtaggacttggatttgacctggcacttcacctcctccaggcagccgtcctagcttgtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tgtaggacttggatttgacctggcacttcacctcctccaggcagccgtcctagcttgtgg 524

                                                                       
Query: 181 gctctgctgcttctccttttagtcccagctcaaggctgccaggctgacttgggagactca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gctctgctgcttctccttttagtcccagctcaaggctgccaggctgacttgggagactca 464

                                                                       
Query: 241 ctctttttttggctccaggcagccaccgaggtgccttggagtcctttcttgtgcgtgaag 300
           |||  |  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ctcactccttggctccaggcagccaccgaggtgccttggagtcctttcttgtgcgtgaag 404

                                                                       
Query: 301 acagggttgggtgtctccgtgggcacggtgggtcttcctttcctggctggtggctgagtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 acagggttgggtgtctccgtgggcacggtgggtcttcctttcctggctggtggctgagtg 344

                                                                       
Query: 361 gcagcggatgctcttacataatcagtctctctctcctccttctttttccagagctagact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gcagcggatgctcttacataatcagtctctctctcctccttctttttccagagctagact 284

                                                                       
Query: 421 tcacgctgagcagctgcagccgaagaaaccagagaaagcgccacccagccccagattcca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tcacgctgagcagctgcagccgaagaaaccagagaaagcgccacccagccccagattcca 224

                                                                       
Query: 481 agaggcctgcctgctggggactcccttctcttcttcctcctcctcctcttcctcctcctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 agaggcctgcctgctggggactcccttctcttcttcctcctcctcctcttcctcctcctg 164

                                                                       
Query: 541 agaccctcaaagtcactgtctcacaccagttcctgagctgcaatgggactggcagccacc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 163 agaccctcaaagtcactgtctcacaccagttcctgagctgcaatgggactggcagccact 104

                              
Query: 601 gccccctggctgtcctccg 619
           |||||||||||||||||||
Sbjct: 103 gccccctggctgtcctccg 85


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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