BAC Information

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BAC

Clone NameMSMg01-233G14
Chromosome8 (Build37)
Map Location 62,392,779 - 62,393,472
singlet/doubletsinglet
Overlap genenone
Upstream geneBC030500, LOC665116, LOC436042
Downstream geneAadat, Mfap3l, LOC100040679, 2700029M09Rik, Clcn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233G14.T7 (MSMg01no233_g14.b1)MSMg01-233G14.TJ (MSMg01no233_g14.g1)
ACCAG399625AG399626
length738740
length of high quality
(start - end)
698 (41 - 738)364 (377 - 740)
definitionCHROMAT_FILE: MSMg01no233_g14.b1 PHD_FILE: MSMg01no233_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:06 2005CHROMAT_FILE: MSMg01no233_g14.g1 PHD_FILE: MSMg01no233_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATTACTTATTTTTAGAGTTTTCGAACTATTTCCTCATAGCACCTATTGAG
AACATAAGAATTATGCTTATTTTGATTTTAGAAAAGAGTGTGAAAATATT
GGTATTGCATATTAACAATCCAACTTTCTGTTGCCCCAACCTAAATAAAA
TTGATTACTTGGAAAATTAAAAACATGTTCTTCCTCCTTAAATGAGAGTT
AAGGTGTTCTGTGTTCTTGGAGGAATGTTAGTATTCAAGGTCAGACACAC
ACACTACAGTCTCCCCTTATATCTGAATCTGTTCTAGCTGTACCTTAGGT
GCTCAACAGCTCTACACATATCTAATTACTCTCTAGACTCACACATGCAA
ACATTTAAAATATGTTCAATAAGTGAATAGATATTTTCTTTAAGGGCTTT
TGCATCCACTGAAGCCTTACTCCCCTTTCTATAAAAAGGATACATTTGGG
AGGAGAAATGATAAAATCCCCAGCAGGACGTTAATACCTACTGAGATCTT
CTGACAGCACCGAGACTCCTCTAAAGCCTCATAAGTGTGTGAGATCTGGT
CTTTGTAAAAATGAGTCAGGACTTGCTTGGTGACAGGTACAATCTTCCAT
TTCTTAAGTTATTTTTATCTTTAGAACACGATTTTGTGAATTCTATTCGA
TCTGGCCTTCTTACTGTATAATCACATGAATAGTTTTN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAGAAGCA
CCTGAAAAAAATGTTCAGCATGCTTAATCATCAGAGAAATGCAAATCAAA
ACAACATTGAGACTCCACCTCACAACAGTCAGAATGGCTAAGATCAAAAA
TTGAGGTGACAGCAGATGCTGGAGAGGATGTGGAGAAAGAGGAACACCCC
TCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTC
TGGCGGTTCCCCGGAAAATTGGACATAGTACTACCGGAGGATCCCGCAAT
ACCTCTCCTGGGCATATATCCCCAACATGTCCCAAGCAGTGAGAAGGACA
CATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGG
AAAAAACCCAGATGCCCCTCAACAGAGGAATAGATACAAAAAAATGTGTA
TCCATGGAGTACTACTCAGCTATTAAAAGGAATGAATTTATGAAATTCCT
AGGCAAATGGTTGGACCTGGAGGACATCATCCTGAGTGAGGTAACACAAT
CACAAAAGAACTCAAAAGATATGTACTCACCGATAAGTGGATATTAGCCC
AGAAACTTAATATACCCAAGATATAAGATTCAATTTGCAAAACACATGAG
ACTGAAGAAGAACGAAGACCAAAGTGTGGACACTTTGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_g14.b1 MSMg01no233_g14.b1 CHROMAT_FILE:
MSMg01no233_g14.b1 PHD_FILE: MSMg01no233_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:06 2005
         (698 letters)



>mm_chr8_62392576_62393673
          Length = 1098

 Score = 1295 bits (670), Expect = 0.0
 Identities = 688/694 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcattacttatttttagagttttcgaactatttcctcatagcacctattgagaac 63
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 897 ggaattcattacttatttttagagttttcgaactatttccttatagcacctattgagaac 838

                                                                       
Query: 64  ataagaattatgcttattttgattttagaaaagagtgtgaaaatattggtattgcatatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 ataagaattatgcttattttgattttagaaaagagtgtgaaaatattggtattgcatatt 778

                                                                       
Query: 124 aacaatccaactttctgttgccccaacctaaataaaattgattacttggaaaattaaaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 aacaatccaactttctgttgccccaacctaaataaaattgattacttggaaaattaaaaa 718

                                                                       
Query: 184 catgttcttcctccttaaatgagagttaaggtgttctgtgttcttggaggaatgttagta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 catgttcttcctccttaaatgagagttaaggtgttctgtgttcttggaggaatgttagta 658

                                                                       
Query: 244 ttcaaggtcagacacacacactacagtctccccttatatctgaatctgttctagctgtac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ttcaaggtcagacacacacactacagtctccccttatatctgaatctgttctagctgtac 598

                                                                       
Query: 304 cttaggtgctcaacagctctacacatatctaattactctctagactcacacatgcaaaca 363
           ||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||
Sbjct: 597 cttaggtgctcaacagctctacatatatataattgctctctagactcacacatgcaaaca 538

                                                                       
Query: 364 tttaaaatatgttcaataagtgaatagatattttctttaagggcttttgcatccactgaa 423
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tttaaaatacgttcaataagtgaatagatattttctttaagggcttttgcatccactgaa 478

                                                                       
Query: 424 gccttactcccctttctataaaaaggatacatttgggaggagaaatgataaaatccccag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gccttactcccctttctataaaaaggatacatttgggaggagaaatgataaaatccccag 418

                                                                       
Query: 484 caggacgttaatacctactgagatcttctgacagcaccgagactcctctaaagcctcata 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 caggacgttaatacctactgagatcttctgacagcaccgagactcctctaaagcctcata 358

                                                                       
Query: 544 agtgtgtgagatctggtctttgtaaaaatgagtcaggacttgcttggtgacaggtacaat 603
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 agtctgtgagatctggtctttgtaaaaatgagtcaggacttgcttggtgacaggtacaat 298

                                                                       
Query: 604 cttccatttcttaagttatttttatctttagaacacgattttgtgaattctattcgatct 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 cttccatttcttaagttatttttatctttagaacacgattttgtgaattctattcgatct 238

                                             
Query: 664 ggccttcttactgtataatcacatgaatagtttt 697
           ||||||||||||||||||||||||||||||||||
Sbjct: 237 ggccttcttactgtataatcacatgaatagtttt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space:   748544
Effective search space used:   748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)