Query= MSMg01no234_o03.b1 MSMg01no234_o03.b1 CHROMAT_FILE:
MSMg01no234_o03.b1 PHD_FILE: MSMg01no234_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:01 2005
(459 letters)
>mm_chr8_24823369_24824228
Length = 860
Score = 818 bits (423), Expect = 0.0
Identities = 450/461 (97%), Gaps = 8/461 (1%)
Strand = Plus / Plus
Query: 4 ggaattcctaacagtc-t--cccatcaaattcaccctgtatgtttgctcttgcagcatca 60
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcctaacagtcgtaa---atcaaattcaccctgtatgtttgctcttgcagcatca 259
Query: 61 gtagccccatcttccctgctgtcaaagg-cccgccactgaagacagatagaagatgagtt 119
|| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 260 gtggccccatcttccctggtgtcaaaggccccgccactgaagacagatagaagatgagtt 319
Query: 120 ctgttttgtactgagttccttggtacctctgtttccttcaagtacttgtccagttctaga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctgttttgtactgagttccttggtacctctgtttccttcaagtacttgtccagttctaga 379
Query: 180 attatactcccatatttttttatgtggtcttaggaaacacttctggccagctttctccct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 attatactcccatatttttttatgtggtcttaggaaacacttctggccagctttctccct 439
Query: 240 cctagttgctttattaatccttctttggttaatatgtattgattgcacatatccaggtta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cctagttgctttattaatccttctttggttaatatgtattgattgcacatatccaggtta 499
Query: 300 atgtgatcttttcatacatgcatagagtgcacaccaatcaaatctaagcaccccc-ttcc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 500 atgtgatcttttcatacatgcatagagtgcacaccaatcaaatctaagcaccccccttcc 559
Query: 359 cacgttttccaatccccaccctcatttccaatctccaaaaatgggtctggcttattttac 418
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cacgttttccaatcctcaccctcatttccaatctccaaaaatgggtctggcttattttac 619
Query: 419 ttcttatagcatctgccagttctattctcttgccctcattt 459
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttcttatagcatctgccagttctattctcttgccctcattt 660
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 860
Length adjustment: 10
Effective length of query: 449
Effective length of database: 850
Effective search space: 381650
Effective search space used: 381650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no234_o03.g1 MSMg01no234_o03.g1 CHROMAT_FILE:
MSMg01no234_o03.g1 PHD_FILE: MSMg01no234_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:01 2005
(233 letters)
>mm_chr8_24902687_24903319
Length = 633
Score = 398 bits (206), Expect = e-115
Identities = 227/234 (97%), Gaps = 2/234 (0%)
Strand = Plus / Minus
Query: 1 agaggtgcgatcttaaataatcatcatgatccattcttgatttccaagataagtctttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 agaggtgcgatcttaaataatcatcatgatccattcttgatttccaagataagtctttca 374
Query: 61 ccatcttgttctgacatagccatctaactaaacctcctccagaaaccacccgaagagagc 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ccatcttgttccgacatagccatctaactaaacctcctccagaaaccacccgaagagagc 314
Query: 121 caagaacggtaaggaaactgagcctagaatggactgataattatagaactgtgattctca 180
||||||| | || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 caagaacagcaaagaaacagagcctagaatggactgataattatagaactgtgattctca 254
Query: 181 caggccgccatctctgatg-tattttgagacaacaaacatcaagagtctaactc 233
||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 253 caggccgccatctctga-gatattttgagacaacaaacatcaagagtctaactc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space: 139776
Effective search space used: 139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
