BAC Information

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BAC

Clone NameMSMg01-234O09
Chromosome8 (Build37)
Map Location 36,793,986 - 36,794,261
singlet/doubletsinglet
Overlap geneLOC100041572
Upstream geneDusp4, LOC675578, Tnks, LOC666792, LOC666797, LOC666804, Ppp1r3b, Thex1, Mfhas1
Downstream geneGm501, Cldn23, LOC671641, D8Ertd82e, Lonrf1, EG544878, 6430573F11Rik, Dlc1, LOC100042892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234O09.T7 (MSMg01no234_o09.b1)MSMg01-234O09.TJ (MSMg01no234_o09.g1)
ACCAG400644AG400645
length724725
length of high quality
(start - end)
618 (46 - 663)277 (77 - 353)
definitionCHROMAT_FILE: MSMg01no234_o09.b1 PHD_FILE: MSMg01no234_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:02 2005CHROMAT_FILE: MSMg01no234_o09.g1 PHD_FILE: MSMg01no234_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTAGCCTTTGCCTGTTTAAGCTACCCAGCATGTGGAATTTTGTTA
CTACAGCTCGATGTCTTATTACCCCGTCGTAAGCCACCTTTAAAGATAGG
ACAAATATACTGAGAATACAGGTCAGGAGATAGTTTATTGAATATTTGCT
CCAGAATTGATCCATGAGGGCCACATGAGGGCCACAGACCATACTCCAGA
GCTGGCTGCATCCATGAGCCAGGACCCTGAAAAGCTTTAAAGCCTGAAAT
CCACAAACAACTGTGCCAAGTTATTCTACCAATTAGGATTTAGGGATAGG
GGACTTCCTTAGAAACATGCCTTTGTTATATATTTATCCTGTCCTCGTTG
GTTGGGGTACTTAGCTCTGGCGGGGACTCGTCTTGCCTAACATTGATATC
TTACCTTGCCAAACAGAATGTCAGTTACTCATGTATGTGACTCGTTCTGC
CAAGGAGAATGTCAGTTCGTTTGGGAACTTACACTTTACTAATCCCTACT
TAAAATGGAAGTTTTATTCCAAATGGCGTCTTATATTGGTGCAGGTGGCT
CTCTTATGTTGGGGCCCCTCCCAGGGACAGCATATACGGGCAAGTACCCT
ACAAGCTCATACCTAGGTACAGGAAGTGCTACCAGGTAATTGGTTTGGGT
CCGAGCTTATGGTAGCTAACTATA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTAAGTGATTTAAAATTGGCAAT
GCTACTAACTGAAACAAAGAAAGAACAGCTTGGCTGCAGCTAGCTCACTG
GTAGAGCAAGGTCTGGGGTTCAGTTCCCAATACTGTCCTGCCAAAAGCAA
AAAAAACAGTATTGTTTTGTGCTAACTCTATGCAAGAAATAAAATGAAGA
AACATACATCTTTCTACTTACCATAATGAGGGAAACGTGGGGAGAAAAAC
CAGCTGTCCTCAAAGCTGGTTACTAAAGAAAGTGGGGTGGAACATGGGGG
TGAGGACAAGATTACATAGTCCTNGTCCAAGTGCGCCTTTTCCTTGGATC
TCTGGAAATCATGTTGACAGTCTACAAAATAAAACAATAAATGATAGTCG
GGAAGGGTAAGAAGGACGTTCCACTACACAGGAGAAGGGAGCCTGCCTCC
TAAATGCTACTGAAAAATGACACCTGCGGATTGGAGAGATGACTCAGCAG
TTACAAGCGTGGGTTGCTCTTCCAGAGAACCCAAGCTTGGCTCCTAGAGC
CTATGTTAGGCAGATCACAAGCACCTGTAACTACAGCTCCAGAGGGTTCA
ATGCCCTCTTTTGTGGCTCCCTTGGACACCTACACACAGTATATGCTTGA
TAGAAAGATAGATAGATAGATAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_o09.g1 MSMg01no234_o09.g1 CHROMAT_FILE:
MSMg01no234_o09.g1 PHD_FILE: MSMg01no234_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:02 2005
         (277 letters)



>mm_chr8_36793786_36794462
          Length = 677

 Score =  526 bits (272), Expect = e-154
 Identities = 275/276 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaagtgatttaaaattggcaatgctactaactgaaacaaagaaagaacagcttggctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 476 attaagtgatttaaaattggcaatgctactaactgaaacaaagaaagaatagcttggctg 417

                                                                       
Query: 61  cagctagctcactggtagagcaaggtctggggttcagttcccaatactgtcctgccaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 cagctagctcactggtagagcaaggtctggggttcagttcccaatactgtcctgccaaaa 357

                                                                       
Query: 121 gcaaaaaaaacagtattgttttgtgctaactctatgcaagaaataaaatgaagaaacata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gcaaaaaaaacagtattgttttgtgctaactctatgcaagaaataaaatgaagaaacata 297

                                                                       
Query: 181 catctttctacttaccataatgagggaaacgtggggagaaaaaccagctgtcctcaaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 catctttctacttaccataatgagggaaacgtggggagaaaaaccagctgtcctcaaagc 237

                                               
Query: 241 tggttactaaagaaagtggggtggaacatgggggtg 276
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 tggttactaaagaaagtggggtggaacatgggggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)