BAC Information

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BAC

Clone NameMSMg01-234O12
Chromosome8 (Build37)
Map Location 114,349,189 - 114,349,346
singlet/doubletsinglet
Overlap geneCfdp1
Upstream geneSf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1
Downstream geneTmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040, Cntnap4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234O12.T7 (MSMg01no234_o12.b1)MSMg01-234O12.TJ (MSMg01no234_o12.g1)
ACCAG400649AG400650
length829687
length of high quality
(start - end)
65 (127 - 191)160 (122 - 281)
definitionCHROMAT_FILE: MSMg01no234_o12.b1 PHD_FILE: MSMg01no234_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:03 2005CHROMAT_FILE: MSMg01no234_o12.g1 PHD_FILE: MSMg01no234_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTACTCTCACACACCAGGCTGGCCACGAACTCAAGATCCTCCTA
CCTCTGCCTCTCTTGTGTTGGGCTTAAAGATGTGCACCACCACCTGGCTG
GGTTTGTTTTGTTTAGTAGTATTGTGGAGGCGAGGGGGAGCTNCCCCTCC
CTTTTTTTTCCCTTCTCCCCTTTCCCCCCCTCTCTTCCCTCCTTCTCCCT
TTTTTTCCCCCTTCCCTTTTTTTTTCCTTCCTTTTCCCCTTTCCCCCCCC
CCCCCCCCCNTATTCCNATTTTTTTTTTTTTTTTCTCCCCCCCCCCCCCC
CCTTTTCTTTTTANNNATTTTTAAGTGGGTTTCCCCGGGACAGGACCCCC
CGAGTGTTTTTTTTTTTTGTTTTTGCCGCCTCTTCGTTTCCCCCCCCCCC
CCAACCACAAATAAATTCTGTGGGGGGGGGGGTGTTCCCTCTCTTTTCCC
CCCTTTTTTTTTCCCCCCTTTTTTTCCCTCTTCCCTTTTTCCTTCCCCCT
CCTCCTTCTATCTTATACTCCCCCTCTTTTTCTCTTCTATTCCCTCCTTT
GTTTTTCTTTCCTTTTTTTTTCCTCTTCTTCTCCCCTTTTTCTTTCTCCT
TTTCCCTTTATCCTTTTTCTCCCCTTCTTTTTTCCTTCCCCCCTCTCTTC
CCCCTCTTTCTTCTCTCTTTTTTTCTCTCCGTTCTTCCTTTTTTCTCCTC
CTTTGCCTTTTTCCCCTCCCTTTTTTTTCTTTTCTTTTCCTCTTCCTCCC
TTATCGTTCCTCTTTTTTTCTCCCGTTCG
GGCTGGTTCGGGAGGGGGGNGAANNANAGAAGTTTCCCAAAGACACCCAG
NTNAAGGGGGGGAAGGGNNGGNGAAGAGAGCACTGTTTTTCCCTAGAGAG
GACAAAAGNCGGCGGGNNAGGGACAGCAGGGAGCGCTGAGCATGCACTAG
AGGGCAGAAGTCACCCTGAGAAAGCAAGCACTCAGGCACACCAAGCCATT
CTAAGACTGGACGGTGCTATTTTTTTTTGTCTGCCTAATTAGTCTTTGAT
AAGAGATTTCTTTGTTTTGTTTTCTTTAANATATCTATTTTTTTTTACCA
CAGCCCGGNTCCNTNCCAGCCCTGTTTTTTTTTTTCCCCCCCCCCCCCAC
TTTTGTAACACATAGTTTTATTTGTGGAGATTTTCCCACCCCCCATGCTN
GACATGCTGGCGTGGGGCAGTCGTGAAGGTGCTTGTTGTCAAGCCTCATG
AGAGAAGCGTCCCTCACGAGTCGTCCAGTGGCCTCCACACACAGAGTGCG
GTGCTCATGATCGTCTCCCTTTGCCCCCACAGATATAAATACATATAACA
AAATTAAAGAGAGAAATTGTGCGCCGTCTCAGGGATTGCGTCATTAATAT
TGACCCTTTGCAAATTTTTTGTTGTTTTCCCCGCGCGTTCGAGTGGAAAG
CGTTGTTCTCTTCTGTTTCTTCTTTACGCATTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_o12.g1 MSMg01no234_o12.g1 CHROMAT_FILE:
MSMg01no234_o12.g1 PHD_FILE: MSMg01no234_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:03 2005
         (160 letters)



>mm_chr8_114348989_114349548
          Length = 560

 Score =  275 bits (142), Expect = 1e-78
 Identities = 154/158 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacagcagggagcgctgagcatgcactagagggcagaagtcaccctgagaaagcaagcac 60
           |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 358 gacagcagtgagcgctgagcatgcactagagggcagaagtcaccctgggaaagcaagcac 299

                                                                       
Query: 61  tcaggcacaccaagccattctaagactggacggtgctatttttttttgtctgcctaatta 120
           |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 298 tcaggcacaccaagccgttctaagactggacggtgctatttatttttgtctgcctaatta 239

                                                 
Query: 121 gtctttgataagagatttctttgttttgttttctttaa 158
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gtctttgataagagatttctttgttttgttttctttaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 160
Length of database: 560
Length adjustment: 8
Effective length of query: 152
Effective length of database: 552
Effective search space:    83904
Effective search space used:    83904
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)