BAC Information

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BAC

Clone NameMSMg01-235M01
Chromosome8 (Build37)
Map Location 104,607,900 - 104,608,466
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCdh11, EG667618, LOC100041368
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235M01.T7 (MSMg01no235_m01.b1)MSMg01-235M01.TJ (MSMg01no235_m01.g1)
ACCAG401228AG401229
length745745
length of high quality
(start - end)
603 (46 - 648)570 (77 - 646)
definitionCHROMAT_FILE: MSMg01no235_m01.b1 PHD_FILE: MSMg01no235_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:09 2005CHROMAT_FILE: MSMg01no235_m01.g1 PHD_FILE: MSMg01no235_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACACATTCTCTCAGATCAACATGCACTAAAGCTGATCTACAATA
ACAACAAAAACAATAGGAAGCCCACATATATGTGGAAGCTAAACCTATTC
AATGATAATTTGGTCAAGGAAGAAATAAAGAAATAAAGAAAGAAATTAAA
AGACTTTTTAGAATTTAATGAAAATGAAGGCACAACATATCCAAACTTAT
GGGACACAATGAACACAGTGCTAAGAGGAAAACTCAGCTCTGAGTGCCTC
CAAAAAGAATCTAGAGAGAGCATACTCTAGTAGCTTATCAACTCACCTGA
AAGCTCTAGAACAAAAAGAAGCACATATGCCCAAGAGCAGTAGACAGCAG
GAAATAATCAAACTCATGGCTGAAAGCAACCAATAGAAAAAAAAAAAAAA
AGGACTATACAAAAATCAACATAATTAGGAGCTGGTTCTTTGAGAAAATC
AACAAGTTAGATGAACCCTTAGTAGACTAACAAAAGGGCAGAGAGACAGT
ATCCAAATTAACAAAAACAGAAATGATAGGGGAGATATAACAAAAGAAAT
TGGGGAAATTTGAAAAATCATTAGATCCTACTACAAAAGCCTATATTCAA
CAAAACTGGAGATTATGCAGTCTTGATGCTCCAATTCCATAGAGGAGGGT
TGTGGGGAATTTCAGGCTGGTATCCAGTTGAGCTCTCTGAACCCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCATCACCAAAATGAGAGATAT
ATGATCAAAATATTGAATCTGCATTCAGAATTTGTGTTGAATTTAATTTG
GTGAATTGCTATGACACTGACTGAGTTGTATTAACAATACTTGGAATTTC
TGTTTTCTGTTTTACTGATGATGATGAATACAACTTGAAAATTAACTAGG
AGTAACAGTTATACTAGAAAATAGGAAAACCTTATAAAAGGAACTATGAG
GGATAATGCACCAGAAAAACAAAACAACAGCAACAAAAAAAATATGGCTC
AAGAGATCATTAAACTTTAATATGATTTGACGCAATAAAGAGTGAAAGAT
TCACAATGCTTGCATTTCTTACACAAAGAAATCAAGAAAATTATTAAAGA
GCAAATAAGAAGCAAACTAAATAAGAAACAAGGACACAAGCATGGAACCA
ACATTTTTTTTTTTCCCAATGGCATCCCCAAAATGTCCCTGAGGTCAGAG
TTTCATCCTAAGTTAATGAGAATTTCTCTCCAAGAAATCATTTCCCTTTG
CTTTGATGTCACCATAAGTGCTGAAATCTCAAGTTATGGTGAGCGGCTCC
TCAGACAACATTCATTTATAGCACCATCTCCTGCAAAAAGATGTCAGATA
CCATATTGTGGCTGTCTGGTCCTTTGNATCCCTTATCTCTAACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_m01.g1 MSMg01no235_m01.g1 CHROMAT_FILE:
MSMg01no235_m01.g1 PHD_FILE: MSMg01no235_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:09 2005
         (570 letters)



>mm_chr8_104607700_104608666
          Length = 967

 Score = 1029 bits (532), Expect = 0.0
 Identities = 560/570 (98%), Gaps = 3/570 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcatcaccaaaatgagagatatatgatcaaaatattgaatctgcattcagaatttgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 actcatcaccaaaatgagagatatatgatcaaaatattgaatctgcattgagaatttgtg 260

                                                                       
Query: 61  ttgaatttaatttggtgaattgctatgacactgactgagttgtattaacaatacttggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgaatttaatttggtgaattgctatgacactgactgagttgtattaacaatacttggaa 320

                                                                       
Query: 121 tttctgttttctgttttactgatgatgatgaatacaacttgaaaattaactaggagtaac 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 tttctgttttctgttttactgatgatgatgaatacgacttgaaaattaactaggagtaac 380

                                                                       
Query: 181 agttatactagaaaataggaaaaccttataaaaggaactatgagggataatgcaccagaa 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttatactagaaaataggaaaagcttataaaaggaactatgagggataatgcaccagaa 440

                                                                       
Query: 241 aaacaaaacaacagcaacaaaaaaaatatggctcaagagatcattaaactttaatatgat 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacaaaacaacagcaacaaaaaaa-tatggctcaagagatcattaaactttaatatgat 499

                                                                       
Query: 301 ttgacgcaataaagagtgaaagattcacaatgcttgcatttcttacacaaagaaatcaag 360
           |||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 500 ttgagggaataaagagtgaaagattcacaatgcttgcatttcttaaacaaagaaatcaag 559

                                                                       
Query: 361 aaaattattaaagagcaaataagaagcaaactaaataagaaacaaggacacaagcatgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaaattattaaagagcaaataagaagcaaactaaataagaaacaaggacacaagcatgga 619

                                                                       
Query: 421 accaacatttttttttttcccaatggcatccccaaaatgtccctgaggtcagagtttcat 480
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 620 accaacattttttttt--cccaatggcatccccaaaatgtccctgaggtcagagtttcac 677

                                                                       
Query: 481 cctaagttaatgagaatttctctccaagaaatcatttccctttgctttgatgtcaccata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 cctaagttaatgagaatttctctccaagaaatcatttccctttgctttgatgtcaccata 737

                                         
Query: 541 agtgctgaaatctcaagttatggtgagcgg 570
           ||||||||||||||||||||||||||||||
Sbjct: 738 agtgctgaaatctcaagttatggtgagcgg 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 967
Length adjustment: 10
Effective length of query: 560
Effective length of database: 957
Effective search space:   535920
Effective search space used:   535920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)