BAC Information

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BAC

Clone NameMSMg01-236B06
Chromosome8 (Build37)
Map Location 34,342,995 - 34,441,048
singlet/doubletdoublet
Overlap geneWrn
Upstream geneEG546052, LOC100042715, LOC628408, EG628412
Downstream genePurg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms, LOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236B06.T7 (MSMg01no236_b06.b1)MSMg01-236B06.TJ (MSMg01no236_b06.g1)
ACCAG401448AG401449
length747753
length of high quality
(start - end)
272 (119 - 390)292 (76 - 367)
definitionCHROMAT_FILE: MSMg01no236_b06.b1 PHD_FILE: MSMg01no236_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:33 2005CHROMAT_FILE: MSMg01no236_b06.g1 PHD_FILE: MSMg01no236_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,342,995 - 34,343,266)(34,440,757 - 34,441,048)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATAGT
ATACCTATATAACAAATAACATACTCTGATAGCTTTCAAAACATTATGTT
GCAAGGCCCTTCTCATCCTTAAAAATATAGGGTCCTAAAGAACTTTTTAT
TAATTCGGTTTACATCCATCAACATTTATCATTTTAGAAATTAAAAGTGA
GAATTTTCAACTTTGATGAAATATTTTTAATTTTTTGAGAATTTCATACA
TGAGTGTTTAATTTACAACGTTCCAAACCTCTCCCTACCCTACCTCCAAG
TACCCCTATGTATCCCCCTCACTCTCTATCAAATTAATGCTGAGGTTTTA
AATATATATGTGTATGTGCGTATGTATGTATGTATGTATGCATGTATGCT
TGCATTTTCCCCCCTATTTTCTACACCTTTTTCCCCGCCGCCCCCCTATT
TTTTTTTCTTTCCCCCTCCACCCCCCCCTCTTTTTTTTTATTTTCTTCAA
ACGTCGCTGCGCTTTTTCACTTTTAATTTTCCTCCCCCCCCCCTGTCCCA
TATTTTTCTTTTTTTTTTCCCCCCTAACTCCCCCCTTCTTCCCCCTTTTT
CCCCCTCCCCCCTTTCCCTTTTTATCCCCCCCCCCTCTCCCCCCCCCTTT
TTTTTTTCCCCCCCCTTTTCCTCCCCCCTCTAACCTCTCCCCCCCGCCAT
TTTATTCTCTTCCTCGCACAGATGTCCCTAACCCCCCACCCATCTTT
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGAGTACACGGCGGAAGTTGGGGT
TAGAAATATAGATTGTCCTGCCAGTGCCGAAACTGGAGATAAAACTGGGA
GTGAATAAACTGAAGAATATAGGTGGTGTCAGCTTCAAGGTCACACTGAC
ATTTAGAAAATGAGAGTGGCTTGAGGGCGGAGACGGGGCATCAGTGAATG
AGGAGTGGGGCGAAGGACATGCTTTAAATAGGAAGGAGACATCAACCCCT
TAAACCTCGGAGGAGTTGAACGATGCACAGATCGTGGATTAACCATTAGG
GTTGATAATGTGGTAGCCTTCCCAGAGGAAGCTGTGCTGCTGAGGGCAAA
ACTCTTGAGTTGGAGTTAGCTTAGGAGAAAATAAGAGCAGAACATTTGAG
GATGAGCAGCACGCGTTGGAAACGTATATTATAAAGACCACGTGCACCAC
TGTCATCTTATTATAACCGTTGTCTGCGCCCCGAGCCCCACCACTAAACC
GGCCATTATCCATTTTCGTTTATTCCCCCAGACCGCCCCAGCTTACTTAA
GATCTGTATTATCCTCAAACCCGTTCGCGCATGATCTACAGCAAGATCTC
TGCCCTTGTGACGTTCCCCGCCCACCCCCTAAATTATACCCCCAAAGTTG
TCACACTTCCGCCCTCCCCACGAATCTGTTTACTCAAACTCCCCTCCCAC
CCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_b06.b1 MSMg01no236_b06.b1 CHROMAT_FILE:
MSMg01no236_b06.b1 PHD_FILE: MSMg01no236_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:33 2005
         (272 letters)



>mm_chr8_34342795_34343466
          Length = 672

 Score =  518 bits (268), Expect = e-151
 Identities = 271/272 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaaaaatatagggtcctaaagaactttttattaattcggtttacatccatcaacattta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaaaaatatagggtcctaaagaactttttattaattcggtttacatccatcaacattta 260

                                                                       
Query: 61  tcattttagaaattaaaagtgagaattttcaactttgatgaaatatttttaattttttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcattttagaaattaaaagtgagaattttcaactttgatgaaatatttttaattttttga 320

                                                                       
Query: 121 gaatttcatacatgagtgtttaatttacaacgttccaaacctctccctaccctacctcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatttcatacatgagtgtttaatttacaacgttccaaacctctccctaccctacctcca 380

                                                                       
Query: 181 agtacccctatgtatccccctcactctctatcaaattaatgctgaggttttaaatatata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtacccctatgtatccccctcactctctatcaaattaatgctgaggttttaaatatata 440

                                           
Query: 241 tgtgtatgtgcgtatgtatgtatgtatgtatg 272
           |||||||||| |||||||||||||||||||||
Sbjct: 441 tgtgtatgtgtgtatgtatgtatgtatgtatg 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no236_b06.g1 MSMg01no236_b06.g1 CHROMAT_FILE:
MSMg01no236_b06.g1 PHD_FILE: MSMg01no236_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:33 2005
         (292 letters)



>mm_chr8_34440557_34441248
          Length = 692

 Score =  549 bits (284), Expect = e-161
 Identities = 290/292 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagagtacacggcggaagttggggttagaaatatagattgtcctgccagtgccgaaactg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 492 cagagtacacggcggaagttggggttagaaatatagattgtcctgccagtggtgaaactg 433

                                                                       
Query: 61  gagataaaactgggagtgaataaactgaagaatataggtggtgtcagcttcaaggtcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gagataaaactgggagtgaataaactgaagaatataggtggtgtcagcttcaaggtcaca 373

                                                                       
Query: 121 ctgacatttagaaaatgagagtggcttgagggcggagacggggcatcagtgaatgaggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ctgacatttagaaaatgagagtggcttgagggcggagacggggcatcagtgaatgaggag 313

                                                                       
Query: 181 tggggcgaaggacatgctttaaataggaaggagacatcaaccccttaaacctcggaggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tggggcgaaggacatgctttaaataggaaggagacatcaaccccttaaacctcggaggag 253

                                                               
Query: 241 ttgaacgatgcacagatcgtggattaaccattagggttgataatgtggtagc 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ttgaacgatgcacagatcgtggattaaccattagggttgataatgtggtagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)