Query= MSMg01no236_b23.b1 MSMg01no236_b23.b1 CHROMAT_FILE:
MSMg01no236_b23.b1 PHD_FILE: MSMg01no236_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:36 2005
(665 letters)
>mm_chr8_109165475_109166539
Length = 1065
Score = 1278 bits (661), Expect = 0.0
Identities = 664/665 (99%)
Strand = Plus / Minus
Query: 1 cctgacttctgagagtaaacaggacaaaggacactccatcatcacccaggactgcccccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 cctgacttctgagagtaaacaggacaaaggacactccatcatcacccaggactgcccccc 806
Query: 61 cacccccagatgtaaggtcattcatgctgactgtagacattggggcagtgattatctgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cacccccagatgtaaggtcattcatgctgactgtagacattggggcagtgattatctgcc 746
Query: 121 caggttctacctcgccatgtgttccaagctccatggtaactccagtgagccaaccacaat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 745 caggttctacctcgccatgtgttccaagctccatggtaactccagtgagccaactacaat 686
Query: 181 caacagggtaaaacctgccatcagcctcagacatgagacgtgttaatagtcttgcagctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 caacagggtaaaacctgccatcagcctcagacatgagacgtgttaatagtcttgcagctt 626
Query: 241 ggtgaatgtggttaaacacattcaagggttcaggccccagtcttgcctctcttttacacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggtgaatgtggttaaacacattcaagggttcaggccccagtcttgcctctcttttacacc 566
Query: 301 acagctcacctctgccaaggggcacttcccccactcaccccctcaagaatgtaaggattc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acagctcacctctgccaaggggcacttcccccactcaccccctcaagaatgtaaggattc 506
Query: 361 tttctcaaaaaatatgtgggtttctttcctcccaagagttgtgacccaaggcagctgggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttctcaaaaaatatgtgggtttctttcctcccaagagttgtgacccaaggcagctgggg 446
Query: 421 taacaaacacatatcagacagagaaggtaacagggaccaaggtgggtgggactgatttaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taacaaacacatatcagacagagaaggtaacagggaccaaggtgggtgggactgatttaa 386
Query: 481 tcaaggatagcagggaaggctggacttccagagacatgctcaagccacaaggcacagggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcaaggatagcagggaaggctggacttccagagacatgctcaagccacaaggcacagggt 326
Query: 541 agtgcagaagacccacccaagctccttgtgcctgtcacagcctgggtgctgcacagaaga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtgcagaagacccacccaagctccttgtgcctgtcacagcctgggtgctgcacagaaga 266
Query: 601 gccaggtgagaacacagcagatgtgaccacagtactggaattgaagttacggtagctggt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gccaggtgagaacacagcagatgtgaccacagtactggaattgaagttacggtagctggt 206
Query: 661 aggta 665
|||||
Sbjct: 205 aggta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_b23.g1 MSMg01no236_b23.g1 CHROMAT_FILE:
MSMg01no236_b23.g1 PHD_FILE: MSMg01no236_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:37 2005
(294 letters)
>mm_chr8_109023612_109024304
Length = 693
Score = 532 bits (275), Expect = e-155
Identities = 287/293 (97%), Gaps = 5/293 (1%)
Strand = Plus / Plus
Query: 1 caagtctctattgcctccagtgagatctgaggtcttgtgagtgctttattgccc--tcct 58
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 caagtctctattgcttccagtgagatctgaggtcttgtgagtgctttattg---attcct 257
Query: 59 tgccataagcattcttagcttctggtctctggaaggtaataattgctcaggccttggcag 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tgccataagcattcttagcttctggtctctggaaggtaataattgctcaggccttggcag 317
Query: 119 gcattcactcagccctgaagtcagctctgcttcactcacgattcagagaaagaggaagca 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gcattcactcagccctgaagtcagctctgcttcactcacgattcagagaaagaggaagca 377
Query: 179 aagcaaaagggatttctcaatggacgcagatgtgttgtctcagcacctctgagaactcga 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aagcaaaagggatttctcaatggacgcagatgtgttgtctcagcacctctgagaactcga 437
Query: 239 agcagaaatgttgagtactgaccagtgatgtcacacagcaaaaaaggaggctc 291
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 agcagaaatgttgagtactgaccagtgatgtcacacagcaaaaaaggaggctc 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 693
Length adjustment: 9
Effective length of query: 285
Effective length of database: 684
Effective search space: 194940
Effective search space used: 194940
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
