BAC Information

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BAC

Clone NameMSMg01-236C14
Chromosome8 (Build37)
Map Location 49,861,167 - 49,861,539
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039801, Cldn22, Wwc2, LOC100040113, Dctd, Odz3
Downstream gene2900073C17Rik, LOC100039866, 4930555F03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236C14.T7 (MSMg01no236_c14.b1)MSMg01-236C14.TJ (MSMg01no236_c14.g1)
ACCAG401506AG401507
length737739
length of high quality
(start - end)
372 (366 - 737)360 (380 - 739)
definitionCHROMAT_FILE: MSMg01no236_c14.b1 PHD_FILE: MSMg01no236_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:39 2005CHROMAT_FILE: MSMg01no236_c14.g1 PHD_FILE: MSMg01no236_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACCAATAAGACAGAATAGCTTTCTGATTTACCAAAGGGAATTTT
TTTTTATTATTTAGTCCATTTCCTTGTTTTGCCTTTTGTTGTGGGAGGCG
GTTTACTGACCACGTGATTCTAAACAGCTTCCTTAAGCCTTGCAGGGCTG
CACGTGTAAGTGGAAGGCAGGCCAGTGATTGGCGGGCTTCTAGGGCAATG
AGTACAGCGTGTAGCATGAAACCCAGTGTATGTGAAATACACCACAGTGG
CCATGGTGATAGTGTAATATGTGATTAGTCAGTTAGTGAAAGGATTCCGC
CATCCATATTTCTCGTACCTCTCTTACCGGTTAGAAGAAAGGGAGTTTGG
AATTCACTCTCAAGCACTCCTTCTGGACACGGAGGAGCAAAATTAGGTGA
ATGCACCGGGATTCCCTTATCTCTTTCATGGAATTTTGTAAAAGGTTTCG
CACTCTTTGTTTTTTTTCCTTCTTCTACTTCTCTGAGCAAAGCCTGCAGC
TAAGCTGGGGCTGCGCCTGGCTCCTGAGAACCTGAAGAGAGCCTCGTGCT
CCTCAGTGCTTCCTCAGAGTCCGGCTCCCAGGCACTTGTCCTCTGCACTG
TATCCAGAGACAGAAATCAGATACCCTCCGCATCAGCCAGGGAGTGGAAC
AAGCAACTTGAAGAGGAGTGGGCAGCTGCAGGCTCTG
CGATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATCTTTCCCTTCAGTTTTTGAAG
ACCCATTACTTCATACATTCCACCAGAATAATGGAGGCATGACCGCAAAA
GAATATAAAACTACACACATAGATAAAAAGATTCGGCATCTTATAAAATA
ACCAACAGATAGTAAGACACCACTGTTTCATCTATCAAATGGCCAAGAAT
CTAAAGCAGAGAACACTTGTCAATGCCTTATGGGAAAATTCAATTTCCCA
CACTGTTGACAGGAGTGAAAGCTGAGAGAAACTGTTTTCCAGGTCATCTT
GACAGATTATTTTTAAAGCCCTACATTTTAATATTGTTTGGCTCCAAGAA
TTTATTCTGTGGTAGTAATAGGATTAAGGGCAAAGATTTAAGACTAATCT
AGTAATTACAAAATATTTTCTCTAATTAATTAGTTTATATACATAAATTA
ATAATCAATATATAATGTAGAATATATAATATATAAGTTACATAAGTGCA
TAAAACACATGATATTTTTAAATATATGCATTATAGAATGAGAAAATCAA
GCTAATCACATATGCAATATTTCAAATGTCAGTTTTCAAGAATAGACTAT
AATGTTACTAACTGCAGTGCCCGTATTCTATAGCAGATCTTTAGAACTTA
TTTCTCCTGAGTGAAATATTTTATCATTTGGACATCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_c14.b1 MSMg01no236_c14.b1 CHROMAT_FILE:
MSMg01no236_c14.b1 PHD_FILE: MSMg01no236_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:39 2005
         (372 letters)



>mm_chr8_49860967_49861739
          Length = 773

 Score =  690 bits (357), Expect = 0.0
 Identities = 369/373 (98%), Gaps = 1/373 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacctctcttaccggttagaagaaagggagtttggaattcactctcaagcactccttctg 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tacctctcttagcggttagaagaaagggagtttggaattcactctcaagcactccttctg 514

                                                                       
Query: 61  gacacggaggagcaaaattaggtgaatgcaccgggattcccttatctctttcatggaatt 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gacacagaggagcaaaattaggtgaatgcaccgggattcccttatctctttcatggaatt 454

                                                                       
Query: 121 ttgtaaaaggtttcgcactctttg-ttttttttccttcttctacttctctgagcaaagcc 179
           |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 453 ttgtaaaaggtttcgcactctttgtttttttttccttcctctacttctctgagcaaagcc 394

                                                                       
Query: 180 tgcagctaagctggggctgcgcctggctcctgagaacctgaagagagcctcgtgctcctc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tgcagctaagctggggctgcgcctggctcctgagaacctgaagagagcctcgtgctcctc 334

                                                                       
Query: 240 agtgcttcctcagagtccggctcccaggcacttgtcctctgcactgtatccagagacaga 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 agtgcttcctcagagtccggctcccaggcacttgtcctctgcactgtatccagagacaga 274

                                                                       
Query: 300 aatcagataccctccgcatcagccagggagtggaacaagcaacttgaagaggagtgggca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aatcagataccctccgcatcagccagggagtggaacaagcaacttgaagaggagtgggca 214

                        
Query: 360 gctgcaggctctg 372
           |||||||||||||
Sbjct: 213 gctgcaggctctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 773
Length adjustment: 9
Effective length of query: 363
Effective length of database: 764
Effective search space:   277332
Effective search space used:   277332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)