BAC Information

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BAC

Clone NameMSMg01-236H13
Chromosome8 (Build37)
Map Location 35,129,244 - 35,129,375
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC628408, EG628412, Wrn, Purg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms, LOC100042769
Downstream geneDctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159, LOC666746, Dusp4, LOC675578, Tnks, LOC666792
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236H13.T7 (MSMg01no236_h13.b1)MSMg01-236H13.TJ (MSMg01no236_h13.g1)
ACCAG401715AG401716
length752813
length of high quality
(start - end)
133 (48 - 180)67 (210 - 276)
definitionCHROMAT_FILE: MSMg01no236_h13.b1 PHD_FILE: MSMg01no236_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:03 2005CHROMAT_FILE: MSMg01no236_h13.g1 PHD_FILE: MSMg01no236_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTAATTCAAGAGGATGGGCGGAATTCTGCAGCTTGCCTCAGACAAACTG
TTCAGCCAAAAATGTCTTCACTTTTTAGAGATCCTGGAAGCAGCTGCTAA
AAATCTGAATCCACACTTAGGAAGCACTAAAACCCAACAACGATAGACAC
AGCCGGGGGGGGGGGGTCGGGGGGGGGGATAGACGACTATTATATATAAT
AGAGAAGTGTTCTGGGCTGAGTATGGTGGTGTCGTCGCTGATGCTAGCCC
TCCTCCTTCGGAGGAGGTATGGCTCAAGATCTGGTTTTGTTCTTTTTTTT
TGACCGAATTTCGCTCTCCTGTCTCATCATTTCATTCATGCCTCTCCCGT
CCTTTGCCTCATGTTCAGCTCTATGTACTCTCTCTGGTCCTTTCTCTTCT
AACTTTCTGTCATCTTCCTTCCTCGTTTCCACATCTTGGTTAATCTTCTC
TGTTTCTTACACTTTTACTTTTCACTTACTCCCCTCTACATCACTTCCCC
TTCTTTCCCGGCTTTTGCTTCATTTACTCCCCTTCCCTCTTTCTTTCTTT
TTTTACTCACTTGCTATTTTTTTTTTCCGATTTCATTCCTTCCTTATTTC
CCCTACTGTCCTCCTACTTTTTCTTTTATTTTCCCTATTGTTTCCCCTAC
ATTTCCGGCTATTTTTCTTTTACAATAAAAAATTCCCTTTCCTCTTTTCC
ATTCCGCTCTTCTTTCTCCGCTTCCCCTTCCCACTTTTTTATCTCTACTA
TC
TTTTTTCTCTTTTCCCTCCTTTTTTTTTCTTCCTTTCTTATGTATTNNNN
CAACTATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTGCTTCCTGATCCACCATG
CCAATGAGCACACCTACTGTGTTGTCCCCACCAAGTCTTCTCCGACATGA
TAGGCTGATACCCTCAGAAACCATCACCCTCCCTCCCTTACGTTGCTTCT
GCCGAGTTTTCTGCTCACCATGATGCAGAAGCAGCCGATGCCCCTAGGTA
ATATCATTATTATAAGTTTTTAAAATGAGAAAGACATTCGCATAGGGTGC
GGCGGGAATATGGAAATAAGACCGTTTTTTTTAGAATATTTGTTCCATTT
TGTACATCGAGTTATTTATGTGATTCCCCCCCCCCCCCTGTTTGTAAATG
TTTCGGGAATAATGTTTTACGCCCAGATAAAAAAAAGACCTGTATGACCT
GTGCAGCTTGCGTCCTGGGACCATGTTTATATGCCGATTTATCGGATGAA
AGACTGACAGACAGATGGATGGAATCTCGCATGTTCGCGCGCACATCAAC
ACCCATTTATTCCCCGCCCCTCTTATACTGTATGTCGAGACCACCTTTTT
TGTTTTCTTCCTCCCTCCTTATTCTTAACCCCATGTTTTATTATTCGCAT
TTTTTATTGATGCTTTATTTATCCATCCTCCCCCTATATTTCTCACACGC
TTTAACCTACCCCACTTATTAATTTTACAACAAACAAATTAATACCCCCT
ATTGTTTAGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_h13.b1 MSMg01no236_h13.b1 CHROMAT_FILE:
MSMg01no236_h13.b1 PHD_FILE: MSMg01no236_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:03 2005
         (133 letters)



>mm_chr8_35129044_35129576
          Length = 533

 Score =  232 bits (120), Expect = 6e-66
 Identities = 129/132 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgttcagccaaaaatgtcttcactttttagagatcctggaagcagctgctaaaaatctg 60
           ||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||
Sbjct: 201 ctgttcagccaaaaatgtcttcactttttagagatcaaggaagcagctgttaaaaatctg 260

                                                                       
Query: 61  aatccacacttaggaagcactaaaacccaacaacgatagacacagccggggggggggggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatccacacttaggaagcactaaaacccaacaacgatagacacagccggggggggggggt 320

                       
Query: 121 cgggggggggga 132
           ||||||||||||
Sbjct: 321 cgggggggggga 332


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 133
Length of database: 533
Length adjustment: 8
Effective length of query: 125
Effective length of database: 525
Effective search space:    65625
Effective search space used:    65625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)