CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATGCAAACATTCAGGTGAACAGCAGAAAGCAAATAGTTTTCAGG
CAAAGCACCTGAGTTGGGATGAAGACACCATCTACTATTTTGAGCAAGCC
ATCTTCTCAATTCACATATTGTAAAAAGAAGTAGTTCCCAGAAGAAAGGA
TGGACATGCCTCCTGATGCCTACAAAGCAGTACAGAGAAAGAATTTTTCT
TAGTAGTAGGAGAAATGAAACCCTAATCATCATAGTACTACTTAAGAAAC
CTTGAAGAACTGGACAGAGAGCTTAGAGGCTATGAGCACTTTTTGTGCAT
GCATAGAAACCAGTTTGGTCCCTAGAATTGCAACTGTTGTAACCAAATTC
CAGTACATCTGATACCATCTGCTGGACTCTATGGACACCAGTCATGTATG
TGGTATATACACATAAATTCAGATGAAACACATACATAGAATAAACACAA
ATCTATTTTTTAAAAGAAAACTGTAAGGCAGAATCAAGAATAAATTGCTT
CCCAGTACATTAAGAATATTTTACAAATAAAAATATTCTATTTCTTAACA
TATTGCATTTCTTTCATTATTTATTTATTTATTTATTTATTTATTTATTT
ATTTATTTATTTATTTATGGTGGAGCATGCTGTTTGGACAGGTACTGCTG
GTTATGGGGAATGGTATATGAAGAGGGCAGTGGG

GCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGAGGAGATTTGGAATTAGGTC
TTCTTTGATGGTCTGATAGAACTCTGCACTAAACCCATCTGGTCCTGGGC
TTTTTTTGGTTGGGAGATGTTTGATGACTGCTTCTATTTCTTTAGGGGAA
ATGGGACTGTTTAGATTGTTATTCTGATCCTGCTTTAACTTTGGTATCTG
GTATCTGTCTAGGAATTTGTCCATTTCATCCAGGTCTTCTAGTTTTGTTG
AGTATAGCCTTTTGTAGTAGGATCTGATGATGTTTTAGATTTCCTAAGGT
TCTGTTGTTATGTTGCCTTTTTCATTACTCATTTTGTTAATTAGGGTACT
GTCCCTATGCCCTCTAGTTAGTCTGGCTAAGGGTTTATCTATCTTGTTGA
TTTTCTCAAATAACCAGTTCCTGGTTTGCTTGGTTCTTTAAATAGTTCTT
TTTGTTTCCAGTTGGTAGATTTCAGCCCTGAGTTGAATTATTTCCTGCCT
TCTACTCCTCTTGGGTGAATTTGCTTTATTAAGTTCTAGTGCTGTCAGAC
TGCTGGTGTATGCTTTCTCTAGTTTCTTTTTGGAGGCACTAAGGGCTATG
AGTTTTCCTCTTAGGACTGCTTTCATTGTGTCCCATAGCTTTGGATATGT
TGTGCCATCATTTTCATTAAACTCTAACAA

Query= MSMg01no236_l20.b1 MSMg01no236_l20.b1 CHROMAT_FILE:
MSMg01no236_l20.b1 PHD_FILE: MSMg01no236_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:22 2005
         (687 letters)



>mm_chr8_66086594_66087681
          Length = 1088

 Score = 1178 bits (609), Expect = 0.0
 Identities = 657/675 (97%), Gaps = 6/675 (0%)
 Strand = Plus / Minus

                                                                        
Query: 14   gcaaacattcaggtgaacagcagaaagcaaatagttttcaggcaaagcacctgagttggg 73
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1088 gcaaacattcaggtgaacagcagaaagcaaatagttttcaggcaaagcacctgagttggg 1029

                                                                        
Query: 74   atgaagacaccatctactattttgagcaagccatcttctcaattcacatattgtaaaaag 133
            ||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1028 atgaaga-atcatctacaattttgagcaagccatcttctcaattcacatattgtaaaaag 970

                                                                        
Query: 134  aagtagttcccagaagaaaggatggacatgcctcctgatgcctacaaagcagtacagaga 193
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 969  aagtagttcccagaagaaaggatggacatacctcctgatgcctacaaagcagtacagaga 910

                                                                        
Query: 194  aagaatttttcttagtagtaggagaaatgaaaccctaatcatcatagtactacttaagaa 253
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909  aagaatttttcttagtagtaggagaaatgaaaccctaatcatcatagtactacttaagaa 850

                                                                        
Query: 254  accttgaagaactggacagagagcttagaggctatgagcactttttgtgcatgcatagaa 313
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849  accttgaagaactggacagagagcttagaggctatgagcactttttgtgcatgcatagaa 790

                                                                        
Query: 314  accagtttggtccctagaattgcaactgttgtaaccaaattccagtacatctgataccat 373
            ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 789  accagtttggttcctagaattgcaactgctgtaaccaaattccagtacatctgataccat 730

                                                                        
Query: 374  ctgctggactctatggacaccagtcatgtatgtggtatatacacataaattcagatgaaa 433
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729  ctgctggactctatgggcaccagtcatgtatgtggtatatacacataaattcagatgaaa 670

                                                                        
Query: 434  cacatacatagaataaacacaaatctattttttaaaagaaaa-ctgtaaggcagaatcaa 492
            ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 669  cacatacatagaataaacacaaatctattttttaaaaaaaaaactgtaaggcagaatcaa 610

                                                                        
Query: 493  gaataaattgcttcccagtacattaagaatattttacaaataaaaatattctatttctta 552
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609  gaatacattgcttcccagtacattaagaatattttacaaataaaaatattctatttctta 550

                                                                        
Query: 553  acatattgcatttctttcattatttatttatttatttatttatttatttatttatttatt 612
            |||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 549  acatattgcatttccttcattatttatttatctatttatttatttatctatttatttatt 490

                                                                        
Query: 613  tatttatttatggtggagcatgctgtttggacaggtactgctggttatggggaatggtat 672
            |||||||    ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 489  tatttat----ggtggagcatgctgtttgggcaggtactgctggttatggggaatggtat 434

                           
Query: 673  atgaagagggcagtg 687
            |||||||||||||||
Sbjct: 433  atgaagagggcagtg 419


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1088
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1078
Effective search space:   729806
Effective search space used:   729806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)