Query= MSMg01no236_m06.b1 MSMg01no236_m06.b1 CHROMAT_FILE:
MSMg01no236_m06.b1 PHD_FILE: MSMg01no236_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:24 2005
(280 letters)
>mm_chr8_84751341_84752020
Length = 680
Score = 542 bits (280), Expect = e-158
Identities = 280/280 (100%)
Strand = Plus / Minus
Query: 1 gagagaaaataataaaatggaataataggattggattaatttgtaaacaatttccaataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gagagaaaataataaaatggaataataggattggattaatttgtaaacaatttccaataa 421
Query: 61 tccatttctctattcccacaacaatatagtactggataaagaagcttcactctttggtcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tccatttctctattcccacaacaatatagtactggataaagaagcttcactctttggtcc 361
Query: 121 aatagtaattatcactaaaatttttaatgctttccttgtttcaaatgtggtatgtaggtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aatagtaattatcactaaaatttttaatgctttccttgtttcaaatgtggtatgtaggtg 301
Query: 181 ttctcattatataattaaaccccatcttgccatctttggtgtgtcaaatactccagtcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ttctcattatataattaaaccccatcttgccatctttggtgtgtcaaatactccagtcta 241
Query: 241 acctacggtttgagaacctagcatagggtgcccagttgta 280
||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 acctacggtttgagaacctagcatagggtgcccagttgta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space: 181841
Effective search space used: 181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no236_m06.g1 MSMg01no236_m06.g1 CHROMAT_FILE:
MSMg01no236_m06.g1 PHD_FILE: MSMg01no236_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:24 2005
(555 letters)
>mm_chr8_84607571_84608529
Length = 959
Score = 1046 bits (541), Expect = 0.0
Identities = 553/559 (98%), Gaps = 5/559 (0%)
Strand = Plus / Plus
Query: 1 tttgtttagctctgtaccccatttttaatggggttattttattttctcggagtccacctt 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 202 tttgtttagctctgtaccccatttttaatggggttattttattttct-ggagtccacctt 260
Query: 61 cttgagttctttatatatattggatattagtcccctatctgattttggattgataaagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgagttctttatatatattggatattagtcccctatctgattttggattgataaagat 320
Query: 121 cctttcccaatctgttggtgtcctttttgtcttatttacagtgtcttttgccttacggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctttcccaatctgttggtgtcctttttgtcttatttacagtgtcttttgccttacggaa 380
Query: 181 gctttgcaattttatgaggttccatttgttggttctcgatcttacagcacaagccattgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctttgcaattttatgaggttccatttgttggttctcgatcttacagcacaagccattgc 440
Query: 241 tgttctattcaggaatttttccctgtgcccatatcttcgagggttttccccactttctcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttctattcaggaatttttccctgtgcccatatcttcgagggttttccccactttctcc 500
Query: 301 tctataagttaaagtgtctctgaatcaccacatttttatttaactaatttaaaacaatga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctataagttaaagtgtctctgaatcaccacatttttatttaactaatttaaaacaatga 560
Query: 361 aaaagaaatataattaaaaggacttgaggatactctagagctgtgtgtgcagttagtaaa 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaagaaatataattaaaaggacttaaggatactctagagctgtgtgtgcagttagtaaa 620
Query: 421 ggaagcacaagtgttctttattcttttttttttttttt----gacatagtagacctagct 476
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 621 ggaagcacaagtgttctttattctttttttttttttttttttgacatagtagacctagct 680
Query: 477 gagaattcttccttcctcttagggctgagatgctctgggccacatggatgctgtgaggcc 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagaattcttccttcctcttagggctgagatgctctgggccacatggatgctgtgaggcc 740
Query: 537 cacacctttccccagaaga 555
|||||||||||||||||||
Sbjct: 741 cacacctttccccagaaga 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 959
Length adjustment: 10
Effective length of query: 545
Effective length of database: 949
Effective search space: 517205
Effective search space used: 517205
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
