BAC Information

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BAC

Clone NameMSMg01-236N12
Chromosome8 (Build37)
Map Location 81,699,743 - 81,699,928
singlet/doubletsinglet
Overlap geneD630040G17Rik
Upstream geneTtc29, Pou4f2, LOC100039422, Rbmxrt, Slc10a7, LOC100039466, Lsm6, EG666340, EG666346
Downstream gene1700011L22Rik, Mmaa, A630049P17, Smad1, LOC666378, LOC666388, LOC666392, Otud4, Tpd52-ps, Abce1, Anapc10, LOC100039439, Hhip, LOC546075
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236N12.T7 (MSMg01no236_n12.b1)MSMg01-236N12.TJ (MSMg01no236_n12.g1)
ACCAG401978AG401979
length675788
length of high quality
(start - end)
230 (14 - 243)189 (185 - 373)
definitionCHROMAT_FILE: MSMg01no236_n12.b1 PHD_FILE: MSMg01no236_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:30 2005CHROMAT_FILE: MSMg01no236_n12.g1 PHD_FILE: MSMg01no236_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTCCTGTCGCCTGCCTTCCAGATGTAGAACTCTTAGCTCCTCCAGCAC
CATGTCTGCCTGTATGCCGCCTTGCTTCCTGTCATGACAATAATGGACTG
AACCTCTGAAACTGTAAGCCAGCTACAATGAAATGTTTTCCTTTATAAGA
GTTGCCTTGGTCATGGTGCCTCTTCACGACAATGAAACCATTCCCATCTC
CCAGGCAATTCTAGGTTTTGTGACATTGACAGTTAACTTATCAATGGGGA
CAGGGCAGCTGTGGTATTTTAAAGCCAACTTGTGACATGTGGGACTGTGA
TATGCAGCCTATTTTGCTTGAATGAGGCTTTCTCTGGTGACCCAGTAGAA
AACTCTACCAGGCACATAAAAGAGAGCCACGTTCCCAGAGTCAGGTGCCT
GATACCACATAGCCTCCAAATCCATGATTCTGTGATTATCAGTCACGCAG
ACAATGCCCCAAGCTTCTGGCATTCTGGTTAGATTCCACCCCCAGAGTTA
CCCGACTATAGTCAGGTATTGTTCCTCCCTACAGTTACCTGATAGCCCAG
TCCACTATAAAAGGATCTGTTTGGCCCCTCCTTGCTCACCTTAAGATTTC
ACCCTTTCTTACTCTTCTCTATAGGCTTCCATCACTCTCTCTCATGCCTC
CTCTCTCCATATGTCCATGGTATGG
CCCCTTTTTTTCCTTTTCCTTTCTTTTCTATCTTCCTTTTTATTNNTTTC
CTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTACTGCCCAATGTTCCTCAC
AACGCCTTGTTCTCTTGGCCTTTAGCCCGAGAAGATTGTCCTTGAGGCAG
GAAATGGACTGCCATCCTGGAAATTCAATGATCAGCTCTTCCCTTGCGAT
GTGTGTGGGAAAGTGTTCGGAAGACAGCAGACATTGTCTCGGCACCTCTC
ATTGCACACAGGTATGTAGGGGGTCGTATCTCCCAGCCTTCCACGGGCCC
TTCCAGAGCTCTCTACTAGCATTAATCTGAGTTTCTCTAACAGAATTTTG
AAGTGGTGGGATTTNATTGTTTCCGACCTTTACCCCCCTTGCTGCCTGGC
ATATGTAAATGATACCCTGCAAAAGAAAAAAAATAGAGAAAAGCCTCATT
GAATTCCCAGAGGAGCTAATGATAAGTGATCTGTACTTAAGTACCTCTAG
GCCAACTCCTGAACTCTGTCAATGATGTATTCAGACCCTTTGAAAGGTTC
GGAGCTACCCCACCTTCTTGGTATCAACTTCTTTTCTATTAATGAAAGAT
TTTTAATTTAGATTCCTGAGCGAACGCTAATCGTGATATTGGCTTATGTT
ATATACTCCCCATCCTGCACGAAGATTTTATTGATATTCTCTTCCCGATT
TCCACTTCCGCTTGTTATTATTATATGACACGCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_n12.g1 MSMg01no236_n12.g1 CHROMAT_FILE:
MSMg01no236_n12.g1 PHD_FILE: MSMg01no236_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:30 2005
         (189 letters)



>mm_chr8_81699543_81700130
          Length = 588

 Score =  308 bits (159), Expect = 2e-88
 Identities = 180/187 (96%), Gaps = 1/187 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgtccttgaggcaggaaatggactgccatcctggaaattcaatgatcagctcttccct 60
           |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 attgtccttgaggcaggaaacggactgccatcctggaaattcaatgaccagctcttccct 260

                                                                       
Query: 61  tgcgatgtgtgtgggaaagtgttcggaagacagcagacattgtctcggcacctctcattg 120
           ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 261 tgcgatgtgtgtgggaaagtgttcggacgacagcagacattgtctcgacacctctcattg 320

                                                                       
Query: 121 cacacaggtatgtagggggtcgtatctcccagccttccacgggcccttccagagctctct 180
           |||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 cacacaggtatgtaaggg-tcgtagctcccagccttccacgggcccttccagagctctct 379

                  
Query: 181 actagca 187
           |||||||
Sbjct: 380 actagca 386


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 588
Length adjustment: 8
Effective length of query: 181
Effective length of database: 580
Effective search space:   104980
Effective search space used:   104980
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)