BAC Information

Click to search

BAC

Clone NameMSMg01-236O17
Chromosome8 (Build37)
Map Location 35,507,925 - 35,624,368
singlet/doubletdoublet
Overlap geneLOC666746
Upstream geneLOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms, LOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159
Downstream geneDusp4, LOC675578, Tnks, LOC666792, LOC666797, LOC666804, Ppp1r3b, Thex1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236O17.T7 (MSMg01no236_o17.b1)MSMg01-236O17.TJ (MSMg01no236_o17.g1)
ACCAG402031AG402032
length750747
length of high quality
(start - end)
332 (380 - 711)486 (140 - 625)
definitionCHROMAT_FILE: MSMg01no236_o17.b1 PHD_FILE: MSMg01no236_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:36 2005CHROMAT_FILE: MSMg01no236_o17.g1 PHD_FILE: MSMg01no236_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,507,925 - 35,508,256)(35,623,883 - 35,624,368)
sequence
TCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGCTTTCTTCCAGAAATCAAAGTCGATCTTAGTTGTATAGATTGGT
TTCCCCTGAGGTGGCCTATTCACACTAAGTAATGGAAGAGAGCTTAGCAA
AAATGGCTGCCTTTGAAGAGGTGGCCAGAGACAGGGGGTGATCAACAGGT
AGAGGTGAAGAATCAGACAACTGGCAACAGTAAGAGCTGTTGCGCCCTGG
GAAGTCAGTGCTACAACTGAGGGCTGGACCTGGAGCCACAGACTGGCAGT
CACTGGGAGATGGCTGTCAGGTTTGTCCCAGAGACAAACGCTCTGACCTC
TCCTTCCTCTCTTTCTCTGCTGCTCCCTCTCATTGACCAAACCCAATCGG
AAGCCAAAGGAAAAGAGACAAAGGACGAGTCAACAACCCCAGATAAACAA
TAGTCAGGAAAGGATGAGACATTGGTCCAGAGGAATAATTCAAAACAAAC
AAACAAACAAACAAACAAACAATTAACAACAACAAAATCCAAGATGTCAT
AGAAGCTGGGCCCAGTGACATGAGAACTGCTCTCCTGAGAAGTGCCTGTA
ATAGTTGGATTGGCATTTCTATTCCACAGAACAGTATCCAACCTCATCTT
TCTGGTGGAGTTGCGGAACCTTCATTGAGAATCTTGCAGTATTAGAATCT
CAGTCTCCCAGCTGTTGTGAGTGCCTGGGTCTCAGAGGTCTCCTGAAGTG

ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAAGTTTGTACGGTGGTTCCGTTTT
TTAAGTTATTCCCAACTAATTATCCCTCCAACATAGCAGAAAGGGGCTCG
CTTCATAGCAATTGTTTTGGTGGATAATCAGTTCTGATCTTTTCACCATT
TGAGCATCCTCCCTAGGACTGGACCCAGGGACCCAGAGGGGGAAGGCTGC
ATGGCTCCTGGCTGTAGGTATATTGGGAGTGGTAAGCAGACCATCTCTTG
CCATAGACACTCGCAGGGCATTCTCAGGGCTGTGCCCTCTGTCCTGAGTA
GGAATAGTTCCCCAGACACCTAGGGTCCTGGGGTTGTCCTATGGAAATCA
AATCTGCAGGCTTTTCTGTTCAGGACTGGGATCTTAGGAGCTCCAAGTCA
GACTGGTGACTTGCTTGGAGCAACCATGTATATCGTCAAGGTATACAGTT
CTTAAAAACTCATCCTGACTCTCCTGAAAAGTCCCCACCTTGGTCTCCAT
CTTTCTTGAGCTCACCGCTCTCTCCCTCCAGCTCTCTAGCACTGTACGTG
ATGCTTGGGCTTCTCTGGAGGGAGCCGTTCCTTAGCCATGCTGCCATTCT
TCCACACTTGCAACCTTCACATTCCTGGTTTTCTTTGGGGGTCAGTGCCT
CTCCTCATTTCCCTGTAGTCTCTCTTCTCTGTCTTCTTTGCTGTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_o17.b1 MSMg01no236_o17.b1 CHROMAT_FILE:
MSMg01no236_o17.b1 PHD_FILE: MSMg01no236_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:36 2005
         (332 letters)



>mm_chr8_35507725_35508456
          Length = 732

 Score =  627 bits (324), Expect = 0.0
 Identities = 330/332 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattgaccaaacccaatcggaagccaaaggaaaagagacaaaggacgagtcaacaaccc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tcattgaccaaacccaatcggaagccaaaggaaaagagacaaaggacgtgtcaacaaccc 260

                                                                       
Query: 61  cagataaacaatagtcaggaaaggatgagacattggtccagaggaataattcaaaacaaa 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagataaacaatagtcaggaaaggatgagacattggtccagaggaataattcaaaacaaa 320

                                                                       
Query: 121 caaacaaacaaacaaacaaacaattaacaacaacaaaatccaagatgtcatagaagctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaacaaacaaacaaacaaacaattaacaacaacaaaatccaagatgtcatagaagctgg 380

                                                                       
Query: 181 gcccagtgacatgagaactgctctcctgagaagtgcctgtaatagttggattggcatttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcccagtgacatgagaactgctctcctgagaagtgcctgtaatagttggattggcatttc 440

                                                                       
Query: 241 tattccacagaacagtatccaacctcatctttctggtggagttgcggaaccttcattgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattccacagaacagtatccaacctcatctttctggtggagttgcggaaccttcattgag 500

                                           
Query: 301 aatcttgcagtattagaatctcagtctcccag 332
           ||||||||||||||||||||||||||||||||
Sbjct: 501 aatcttgcagtattagaatctcagtctcccag 532


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no236_o17.g1 MSMg01no236_o17.g1 CHROMAT_FILE:
MSMg01no236_o17.g1 PHD_FILE: MSMg01no236_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:36 2005
         (486 letters)



>mm_chr8_35623683_35624568
          Length = 886

 Score =  932 bits (482), Expect = 0.0
 Identities = 485/486 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaggggctcgcttcatagcaattgttttggtggataatcagttctgatcttttcaccat 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 aaaggggctcgcttcagagcaattgttttggtggataatcagttctgatcttttcaccat 627

                                                                       
Query: 61  ttgagcatcctccctaggactggacccagggacccagagggggaaggctgcatggctcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ttgagcatcctccctaggactggacccagggacccagagggggaaggctgcatggctcct 567

                                                                       
Query: 121 ggctgtaggtatattgggagtggtaagcagaccatctcttgccatagacactcgcagggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ggctgtaggtatattgggagtggtaagcagaccatctcttgccatagacactcgcagggc 507

                                                                       
Query: 181 attctcagggctgtgccctctgtcctgagtaggaatagttccccagacacctagggtcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 attctcagggctgtgccctctgtcctgagtaggaatagttccccagacacctagggtcct 447

                                                                       
Query: 241 ggggttgtcctatggaaatcaaatctgcaggcttttctgttcaggactgggatcttagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ggggttgtcctatggaaatcaaatctgcaggcttttctgttcaggactgggatcttagga 387

                                                                       
Query: 301 gctccaagtcagactggtgacttgcttggagcaaccatgtatatcgtcaaggtatacagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gctccaagtcagactggtgacttgcttggagcaaccatgtatatcgtcaaggtatacagt 327

                                                                       
Query: 361 tcttaaaaactcatcctgactctcctgaaaagtccccaccttggtctccatctttcttga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tcttaaaaactcatcctgactctcctgaaaagtccccaccttggtctccatctttcttga 267

                                                                       
Query: 421 gctcaccgctctctccctccagctctctagcactgtacgtgatgcttgggcttctctgga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gctcaccgctctctccctccagctctctagcactgtacgtgatgcttgggcttctctgga 207

                 
Query: 481 gggagc 486
           ||||||
Sbjct: 206 gggagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)