Query= MSMg01no237_e15.b1 MSMg01no237_e15.b1 CHROMAT_FILE:
MSMg01no237_e15.b1 PHD_FILE: MSMg01no237_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:05 2005
(565 letters)
>mm_chr8_13423060_13424023
Length = 964
Score = 893 bits (462), Expect = 0.0
Identities = 481/490 (98%), Gaps = 7/490 (1%)
Strand = Plus / Minus
Query: 5 gaattcagtgtt--gttcccacagctaagaaataactgaaaaccattaaaataccaggtg 62
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gaattcagtgttggg---ccacagctaagaaataactgaaaaccattaaaataccaggtg 431
Query: 63 tcccttgtcccttcagcccccagtgggccatgctgccagcccctcctctctagatgactt 122
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tcccttgtcccttcagcttccagtgggccatgctgccagcccctcctctctagatgactt 371
Query: 123 ccaataaatggaagctgatggagaaacatcccctggaggctttggagatctgggcttact 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ccaataaatggaagctgatggagaaacatcccctggaggctttggagatctgggcttact 311
Query: 183 catatgcactgagggatgggtgtccaatcagcttgcatgacacccagctctgtcctggcc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 catatgcactgagggatgggtgtccaatcagcttgcatgacacccagctctgtcctggcc 251
Query: 243 cttcttcccaaaccgcaatctacctgagactcacttcatgggtgtctttttttt--cccc 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 250 cttcttcccaaaccgcaatctacctgagactcacttcatgggtgtctttttttttccccc 191
Query: 301 gagacagggtctctctgtatagccctggttgtcctggaactcactctgtagaccaggctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gagacagggtctctctgtatagccctggttgtcctggaactcactctgtagaccaggctg 131
Query: 361 gcctcgaactcagaaatccacctgcctctgcctcccaagagctgggattaaaggcgtgtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 gcctcgaactcagaaatccacctgcctctgcctcccaagagctgggattaaaggcgtgtg 71
Query: 421 ccaccacgcctggcttcatgggtgtcttgatgagtcttctattgccatgaaaataaaatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 ccaccacgcctggcttcatgggtgtcttgatgagtcttctattgccatgaaaataaaatg 11
Query: 481 ctatgaccaa 490
||||||||||
Sbjct: 10 ctatgaccaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 964
Length adjustment: 10
Effective length of query: 555
Effective length of database: 954
Effective search space: 529470
Effective search space used: 529470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no237_e15.g1 MSMg01no237_e15.g1 CHROMAT_FILE:
MSMg01no237_e15.g1 PHD_FILE: MSMg01no237_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:05 2005
(289 letters)
>mm_chr8_13309504_13310193
Length = 690
Score = 507 bits (262), Expect = e-148
Identities = 283/290 (97%), Gaps = 1/290 (0%)
Strand = Plus / Plus
Query: 1 actgtatagaccaggctgggctggaacttccagagatctgcctgcctccgctttctgagt 60
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 201 actgtatagaccaggctgggctggaacttccagagatttgcctgcctcagctttctgagt 260
Query: 61 gctggaattaccacgctaccacacctggccttttttcctgtttttcctggcactagttat 120
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgggattagcacgctaccacacctggccttttttcctgtttttcctggcactagttat 320
Query: 121 ctgagttcaggtcttcatgcttgtgagcaaatactctcacccactgagcacctccccagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgagttcaggtcttcatgcttgtgagcaaatactctcacccactgagcacctccccagc 380
Query: 181 cccagta-aaaccctttatatccttcaaaactgatttacttcaaagcatagatcccgaag 239
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 381 cccagtagaaaccctttatatccttgaaaactgatttacttcaaagcatagatccggaag 440
Query: 240 aaacctgcatttgagttacatgacttgattttctaaattaatgtgatata 289
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacctgcatttgagttacatgacttgattttctaaattaatgtgatata 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 690
Length adjustment: 9
Effective length of query: 280
Effective length of database: 681
Effective search space: 190680
Effective search space used: 190680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
