BAC Information

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BAC

Clone NameMSMg01-237P12
Chromosome8 (Build37)
Map Location 49,291,855 - 49,292,094
singlet/doubletsinglet
Overlap genenone
Upstream geneStox2, 4930448N21Rik, D030016E14Rik, Rwdd4a, LOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2, LOC100040113, Dctd
Downstream geneOdz3, 2900073C17Rik, LOC100039866
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237P12.T7 (MSMg01no237_p12.b1)MSMg01-237P12.TJ (MSMg01no237_p12.g1)
ACCAG402762AG402763
length665668
length of high quality
(start - end)
287 (6 - 292)283 (16 - 298)
definitionCHROMAT_FILE: MSMg01no237_p12.b1 PHD_FILE: MSMg01no237_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:55 2005CHROMAT_FILE: MSMg01no237_p12.g1 PHD_FILE: MSMg01no237_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCCGCGGAATTCTCTGTGGGTTCGGTTGCTGGAACACTGTGAGAGACTT
TGGTTGGCGCGCTCGAGATGGGTTCTCTTAAACAAGAGGAAATTGAGACT
AGTAAGTAGTGTGTGGGTCACAGAACAGTGCTAGGAGCCTTCAAGAGCAG
GAGAGGATTCTGCAGTTGGGAGGGGCTTGGCATGGAGTGACCAGCCATGA
ACCTGCGTACTGCGGGGAGTATTGTGCTGGAAGACGAGAGGACCGTGGGG
GTCGTTCTATTCTGACCATGTCCCACTACCTCTAGGTTAGTAGGATTTTT
AATCACACCCCCCCGCCCTCTTTGAACTAGGGAGGGGTAAAGAGGAGAAT
GGCTGATGGGAACAAAGAAAGGGACAGGTGGTCCCGAGCAGAGGATAACG
CAGACCTTTGTAGATGAGGGATTAAGTGTATTCCTTTCCATTTCCGTTTT
TCCTTTTTCCGTTCCTCTGGGTCGGATGAGGCTGAGAGGCTGAGAGTCAT
GGCATATTTGGAGCCTTTTAGAAGAGGTGCTTTCAGTTAGTTATTGGCTC
TGTCCTTGCCTTGGTTGAGGGACCATAGGAGACTGATAGTTTCTTGTCTT
CTGGGGCTTCCTAACAGATGATTTTACCCACAGTTAAGTGCGAAATAAAC
GTCAGGAATTCTCCG
CCTTTCCGCAGCAGTTTGCAAAGGATACTAGCAGAGTCCTCTATTCACCA
CTACTCATAGCCCCCCCTCTGACTTTGTGGAGTGAGAAGCTGATCTCCGC
AGAGTTCACTCCCCAGGACTTCAACCCCCATTCCTATGACAATCACAAAG
CCAAGGTTGTTCTATCTATCATCTGTCCAGACATCCATACATTAGGGTTC
CCGTGTACATCTCTTGGTTTGTCTCATTTGCCAGGCTGACTTGCAGGACT
CAGGAAAACACATTTACTAGCCCTGTTGCAAAGACCATCGCAAGACATTA
TGTAGGGATTTGTACGCCCAGGGAAGGGAGCAGACACAGTCACCTCTTAG
AGTTTCTGAAGCTCTCTGAACCCCTTCATTTTGGGATATTATGGAGGTCT
CATAACATGGACATGACCAATTAAACCATGCCCATGGGTGATTAACTCAA
CCCTGGTGGTTATAAGTTGAGACTGGAAAATGACCTCTAACCCTGAGTTA
GCTTAGCCCAATCCTAGGCTTCACTCAACCCCAAGTGAACTCAGTAGCAT
ACAAAGACCCTGTCACTTCAGAGATTCTAGGGCTCTTATGGCTTATGCCC
CAGGAAATTAGGGCAAATACCAAAAGGCATTTCATAGCTGCCCAGCGGCA
TAACTGTCTTTACTGTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_p12.b1 MSMg01no237_p12.b1 CHROMAT_FILE:
MSMg01no237_p12.b1 PHD_FILE: MSMg01no237_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:55 2005
         (287 letters)



>mm_chr8_49291653_49292339
          Length = 687

 Score =  273 bits (141), Expect = 1e-77
 Identities = 228/285 (80%), Gaps = 45/285 (15%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattctctgtgggttcggttgctggaacactgtgagagactttggttggcgcgctcgag 62
           |||||||||| |||||||||||||||||| ||||||||||||| ||  || | |||||||
Sbjct: 203 gaattctctgagggttcggttgctggaacgctgtgagagacttgggggggggggctcgag 262

                                                                       
Query: 63  atgggttctcttaaacaagaggaaattgagactagtaagtagtgtgtgggtcacagaaca 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atgggttctcttaaacaagaggaaattgagactagtaagtagtgtgtgggtcacagaaca 322

                                                                       
Query: 123 gtgctaggagccttcaagagcaggagaggattctgcagttgggaggggcttggcatggag 182
           || |||| |||||||||||                                         
Sbjct: 323 gtactagaagccttcaaga----------------------------------------- 341

                                                                       
Query: 183 tgaccagccatgaacctgcgtactgcggggagtattgtgctggaagacgagaggaccgtg 242
             || |||||||||||||||||||||||| | |||||||||||||||| |||||||||||
Sbjct: 342 --ac-agccatgaacctgcgtactgcggg-attattgtgctggaagacaagaggaccgtg 397

                                                        
Query: 243 ggggtcgttctattctgaccatgtcccactacctctaggttagta 287
           |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 398 ggggtcgttctattctgatcatgtcccactacctctaggttagta 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)