BAC Information

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BAC

Clone NameMSMg01-237P22
Chromosome8 (Build37)
Map Location 62,491,204 - 62,612,675
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665116, LOC436042
Downstream geneAadat, Mfap3l, LOC100040679, 2700029M09Rik, Clcn3, B230317F23Rik, Nek1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237P22.T7 (MSMg01no237_p22.b1)MSMg01-237P22.TJ (MSMg01no237_p22.g1)
ACCAG402779AG402780
length717706
length of high quality
(start - end)
282 (436 - 717)331 (376 - 706)
definitionCHROMAT_FILE: MSMg01no237_p22.b1 PHD_FILE: MSMg01no237_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:57 2005CHROMAT_FILE: MSMg01no237_p22.g1 PHD_FILE: MSMg01no237_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,491,204 - 62,491,485)(62,612,346 - 62,612,675)
sequence
CGATGCACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATCTCCAATGGAACCATGTTACAGT
ACAAGAGAGTCATAGTTCTTAATCTTAAAATATTTAAAATATAAACTCAT
TGTGAAAACTAGGTGGCACATTCAGACAGTTTTCTGGCACCATATGTATG
GTACATAAGACTTAACTAAAATATGAAGATTAAAAGGAAAAATTATTGAG
AATATTAAGAGCCACAAGATTTTGTTAGAGGACTATAGAAAATGTAGAAA
GATTCAAATTATACAATTAGAAATAAATGTGGGTGAAATTAGTTGAATGA
CAGAAACGTTTTTGTTTATTCCCCCCCCTCCGCTTAATACTCCATCTTCT
CACATTAGAAGATGCTTTATAATGAATTGAGAACACCACAGAGCAGAAAC
ATATAGTGTATATACAAAAGAGAAAATGAAGGATATCAAATCCCTTCACT
GAAGAAAATCATATAAAACCAAAGGCATCAAAAGGAAAGGAAAGCCATAA
AACGCCAACCCATCAACCTGGAAACAATCAGCCCTGGCACAGAGCCTTAA
GTTAAGAGTTGAGATTCAAAAAAGTTCATTTTCTATACTGATTTAGAAAA
GCAGTATTGCTATCCTAGACTTTTAAACCTTGTAAAATTAAAGTTACCTT
ACATTAGCTCTACATGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTTC
AATTTCACAAATTAAGAATGCTGAAAAGAAATCTAATTAGTTCAGAATTG
GATTGGTGTAATGCCCACGCAGGTCAAAAGGACAGTCATGGTCTTTTTTA
AAAAAAAACTTGATTTCTATGATGAAATAAAGCTAGGATGGACAGAAATT
TTAATGGTCATTTTCTGGAAACAAAGCTTCAGATGTCACAACCTTTCAAG
AAAAATTTGGTACTCCAGGTACATAATAAATCCTAAACATCTTTCTGATA
TAGATTTTTATTATTACTTTGTAGGTAGCCTAGCATCACCTAGTCACTGA
TTTATTTTTATTTCTCCCCCCCCCCCATAAGTAGCATTTATATGCATTAA
AATAGGTTATTTTTGGTTAGATTTCTAAACAAGTGTGTGCTTTAATAGTA
ATGTGATTGACTTATGTCTCTCTGCTGGCTATGAGGTAAACCTTTAAAAT
TAAGACTATGAATCATGTTGGGTTGCTCACAGCCACCAGTCTGAGTACTG
GGCACTGAACCTGAGTCCTCTGCAAGAGCAGCAAGTGTTCTTAATTGCTG
AGCAATTTCTCCAGCCCAAAGCATGCAATACCTCAGGGCAAGTATCATTT
TCCTTTGCTGGCTATGAATGAGCTCATTAATTTCTGTCTGGTTTTCAAAC
ATCAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_p22.b1 MSMg01no237_p22.b1 CHROMAT_FILE:
MSMg01no237_p22.b1 PHD_FILE: MSMg01no237_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:57 2005
         (282 letters)



>mm_chr8_62491004_62491685
          Length = 682

 Score =  491 bits (254), Expect = e-143
 Identities = 275/282 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccacagagcagaaacatatagtgtatatacaaaagagaaaatgaaggatatcaaatccct 60
           |||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 201 ccacagagcaaaaacatatagtgtgtatacaaaagagaaaatgaaggatagcaaatccct 260

                                                                       
Query: 61  tcactgaagaaaatcatataaaaccaaaggcatcaaaaggaaaggaaagccataaaacgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcactgaagaaaatcatataaaaccaaaggcatcaaaaggaaaggaaagccataaaacgc 320

                                                                       
Query: 121 caacccatcaacctggaaacaatcagccctggcacagagccttaagttaagagttgagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacccatcaacctggaaacaatcagccctggcacagagccttaagttaagagttgagat 380

                                                                       
Query: 181 tcaaaaaagttcattttctatactgatttagaaaagcagtattgctatcctagactttta 240
           |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 381 tcaaaaaagttcattttctatattgatttagaaaagctgtattgctatcctagactttta 440

                                                     
Query: 241 aaccttgtaaaattaaagttaccttacattagctctacatgt 282
           |||||||||||||||||||||| || ||||||||||||||||
Sbjct: 441 aaccttgtaaaattaaagttactttgcattagctctacatgt 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no237_p22.g1 MSMg01no237_p22.g1 CHROMAT_FILE:
MSMg01no237_p22.g1 PHD_FILE: MSMg01no237_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:57 2005
         (331 letters)



>mm_chr8_62612321_62613051
          Length = 731

 Score =  623 bits (322), Expect = 0.0
 Identities = 328/330 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cataagtagcatttatatgcattaaaataggttatttttggttagatttctaaacaagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 355 cataagtagcatttatatgcattaaaataggttatttttggttagttttctaaacaagtg 296

                                                                       
Query: 61  tgtgctttaatagtaatgtgattgacttatgtctctctgctggctatgaggtaaaccttt 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tgcgctttaatagtaatgtgattgacttatgtctctctgctggctatgaggtaaaccttt 236

                                                                       
Query: 121 aaaattaagactatgaatcatgttgggttgctcacagccaccagtctgagtactgggcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 aaaattaagactatgaatcatgttgggttgctcacagccaccagtctgagtactgggcac 176

                                                                       
Query: 181 tgaacctgagtcctctgcaagagcagcaagtgttcttaattgctgagcaatttctccagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 tgaacctgagtcctctgcaagagcagcaagtgttcttaattgctgagcaatttctccagc 116

                                                                       
Query: 241 ccaaagcatgcaatacctcagggcaagtatcattttcctttgctggctatgaatgagctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 ccaaagcatgcaatacctcagggcaagtatcattttcctttgctggctatgaatgagctc 56

                                         
Query: 301 attaatttctgtctggttttcaaacatcag 330
           ||||||||||||||||||||||||||||||
Sbjct: 55  attaatttctgtctggttttcaaacatcag 26


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)