MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-260F04
Chromosome	8 (Build37)
Map Location	111,905,890 - 111,906,040
singlet/doublet	singlet
Overlap gene	LOC100042829
Upstream gene	Atbf1, 4922502B01Rik, Gm1943
Downstream gene	Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, Hydin
Link	Open Mouse BAC browser

Click to get alignment info.

name	Atbf1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11906 MGI:99948
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4922502B01Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70954 MGI:1918204
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Gm1943 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:384864 MGI:3037801
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA pseudo : _no_value

name	LOC100042829 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042829
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	Pmfbp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56523 MGI:1930136
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dhx38 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:64340 MGI:1927617
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Txnl4b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:234723 MGI:2443724
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15439 MGI:96211
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dhodh (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56749 MGI:1928378
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pkd1l3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:244646 MGI:2664670
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	2400003C14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71955 MGI:1919205
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930566A11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75871 MGI:1923121
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	D8Ertd587e (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:52335 MGI:1261787
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668089 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668089
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins pseudo : _no_value

name	LOC672735 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:672735
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	Ap1g1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11765 MGI:101919
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Phlppl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:244650 MGI:2444928
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs, 2 Proteins

name	Marveld3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73608 MGI:1920858
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100041884 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041884
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Tat (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:234724 MGI:98487
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Chst4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26887 MGI:1349479
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zfp612 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:234725 MGI:2443465
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm1467 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:384866 MGI:2686313
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins

name	Calb2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12308 MGI:101914
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC025546 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:234728 MGI:2384580
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hydin (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:244653 MGI:2389007
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Atbf1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110225363 GeneID:11906 MGI:99948
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : AT motif binding factor 1 transcript_id : NM_007496.2

name	4922502B01Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94383806 GeneID:70954 MGI:1918204
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA 4922502B01 gene transcript_id : XM_994088.1

name	LOC100042829 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259091 GeneID:100042829
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical protein LOC100042829 transcript_id : XM_001479588.1

name	Pmfbp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802903 GeneID:56523 MGI:1930136
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : polyamine modulated factor 1 binding protein 1 transcript_id : NM_019938.2

name	Dhx38 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:30410009 GeneID:64340 MGI:1927617
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DEAH (Asp-Glu-Ala-His) box polypeptide 38 transcript_id : NM_178380.1

name	Txnl4b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31342268 GeneID:234723 MGI:2443724
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thioredoxin-like 4B transcript_id : NM_175646.2

name	Hp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:8850218 GeneID:15439 MGI:96211
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : haptoglobin transcript_id : NM_017370.1

name	Dhodh (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85677502 GeneID:56749 MGI:1928378
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dihydroorotate dehydrogenase transcript_id : NM_020046.3

name	Pkd1l3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:115583680 GeneID:244646 MGI:2664670
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : polycystic kidney disease 1 like 3 transcript_id : NM_001039700.2

name	Pkd1l3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:115583671 GeneID:244646 MGI:2664670
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : polycystic kidney disease 1 like 3 transcript_id : NM_181544.2

name	2400003C14Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21312625 GeneID:71955 MGI:1919205
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2400003C14 gene transcript_id : NM_028018.1

name	4930566A11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:74315962 GeneID:75871 MGI:1923121
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930566A11 gene transcript_id : NM_029468.1

name	D8Ertd587e (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124286822 GeneID:52335 MGI:1261787
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA segment, Chr 8, ERATO Doi 587, expressed transcript_id : NM_001080930.1

name	LOC672735 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259032 GeneID:672735
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : hypothetical protein LOC672735 transcript_id : XM_001477128.1

name	Ap1g1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56744241 GeneID:11765 MGI:101919
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adaptor protein complex AP-1, gamma 1 subunit transcript_id : NM_009677.3

name	Phlppl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149259036 GeneID:244650 MGI:2444928
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs, 2 Proteins product : PH domain and leucine rich repeat protein phosphatase-like, transcript variant 1 transcript_id : XM_146511.7

name	Marveld3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:47059064 GeneID:73608 MGI:1920858
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : MARVEL (membrane-associating) domain containing 3 transcript_id : NM_212447.1

name	Marveld3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:47059473 GeneID:73608 MGI:1920858
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : MARVEL (membrane-associating) domain containing 3 transcript_id : NM_028584.2

name	Tat (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130213 GeneID:234724 MGI:98487
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tyrosine aminotransferase transcript_id : NM_146214.2

name	Chst4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982527 GeneID:26887 MGI:1349479
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : carbohydrate (chondroitin 6/keratan) sulfotransferase 4 transcript_id : NM_011998.3

name	Zfp612 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31559870 GeneID:234725 MGI:2443465
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger protein 612 transcript_id : NM_175480.3

name	Gm1467 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94383818 GeneID:384866 MGI:2686313
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins product : gene model 1467, (NCBI) transcript_id : XM_357906.4

name	Calb2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34098930 GeneID:12308 MGI:101914
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calbindin 2 transcript_id : NM_007586.1

name	BC025546 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142364202 GeneID:234728 MGI:2384580
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC025546 transcript_id : NM_146215.3

name	Hydin (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31541985 GeneID:244653 MGI:2389007
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hydrocephalus inducing transcript_id : NM_172916.2

name	Atbf1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110225364 CCDS:CCDS22651.1 GeneID:11906 MGI:99948
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA]; GO:0005634 - nucleus [Evidence NAS] [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] [Evidence TAS]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0030182 - neuron differentiation [Evidence TAS]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] [Evidence NAS]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : AT motif binding factor 1 protein_id : NP_031522.2

name	4922502B01Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94383807 GeneID:70954 MGI:1918204
definition	codon_start : 1 product : hypothetical protein LOC70954 protein_id : XP_999182.1

name	LOC100042829 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259092 GeneID:100042829
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479638.1

name	Pmfbp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9910570 GeneID:56523 MGI:1930136
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] codon_start : 1 note : sperm tail associated protein product : polyamine modulated factor 1 binding protein 1 protein_id : NP_064322.1

name	Dhx38 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30410010 CCDS:CCDS22652.1 GeneID:64340 MGI:1927617
definition	codon_start : 1 note : pre-mRNA splicing factor 16; DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 38 product : DEAH (Asp-Glu-Ala-His) box polypeptide 38 protein_id : NP_848467.1

name	Txnl4b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28316734 GeneID:234723 MGI:2443724
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0006397 - mRNA processing [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy product : Dim1-like protein protein_id : NP_783577.1

name	Hp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:8850219 GeneID:15439 MGI:96211
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0004252 - serine-type endopeptidase activity [Evidence IEA] codon_start : 1 product : haptoglobin protein_id : NP_059066.1

name	Dhodh (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9910194 GeneID:56749 MGI:1928378
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IEA] GO_function : GO:0004152 - dihydroorotate dehydrogenase activity [Evidence IEA]; GO:0004158 - dihydroorotate oxidase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0006207 - 'de novo' pyrimidine base biosynthesis [Evidence IEA]; GO:0006221 - pyrimidine nucleotide biosynthesis [Evidence IEA]; GO:0006222 - UMP biosynthesis [Evidence IEA] codon_start : 1 product : dihydroorotate dehydrogenase protein_id : NP_064430.1

name	Pkd1l3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:115583681 GeneID:244646 MGI:2664670
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0005529 - sugar binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0007218 - neuropeptide signaling pathway [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1 product : polycystic kidney disease 1 like 3 isoform a protein_id : NP_001034789.2

name	Pkd1l3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:115583672 CCDS:CCDS22654.1 GeneID:244646 MGI:2664670
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0005529 - sugar binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0007218 - neuropeptide signaling pathway [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2 product : polycystic kidney disease 1 like 3 isoform b protein_id : NP_853522.2

name	2400003C14Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312626 CCDS:CCDS22655.1 GeneID:71955 MGI:1919205
definition	GO_function : GO:0003674 - molecular_function [Evidence IEA] codon_start : 1 product : hypothetical protein LOC71955 protein_id : NP_082294.1

name	4930566A11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:74315963 GeneID:75871 MGI:1923121
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC75871 protein_id : NP_083744.1

name	D8Ertd587e (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124286823 GeneID:52335 MGI:1261787
definition	codon_start : 1 product : hypothetical protein LOC52335 protein_id : NP_001074399.1

name	LOC672735 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259033 GeneID:672735
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477178.1

name	Ap1g1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:56744242 GeneID:11765 MGI:101919
definition	GO_component : GO:0030130 - clathrin coat of trans-Golgi network vesicle [Evidence IEA]; GO:0030136 - clathrin-coated vesicle [Evidence ISS]; GO:0005905 - coated pit [Evidence IEA]; GO:0005802 - Golgi trans face [Evidence TAS] [Evidence IDA]; GO:0048471 - perinuclear region [Evidence IDA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006897 - endocytosis [Evidence IEA]; GO:0006886 - intracellular protein transport [Evidence IEA] [Evidence TAS]; GO:0006461 - protein complex assembly [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA]; GO:0016192 - vesicle-mediated transport [Evidence TAS] codon_start : 1 note : gamma-adaptin product : adaptor protein complex AP-1, gamma 1 subunit protein_id : NP_033807.2

name	Phlppl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149259037 GeneID:244650 MGI:2444928
definition	codon_start : 1 product : PH domain and leucine rich repeat protein phosphatase-like isoform 1 protein_id : XP_146511.4

name	Marveld3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:47059065 CCDS:CCDS22656.1 GeneID:73608 MGI:1920858
definition	GO_component : GO:0016020 - membrane [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform b is encoded by transcript variant 2 product : MARVEL (membrane-associating) domain containing 3 isoform b protein_id : NP_997612.1

name	Marveld3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:47059474 CCDS:CCDS22657.1 GeneID:73608 MGI:1920858
definition	GO_component : GO:0016020 - membrane [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1 product : MARVEL (membrane-associating) domain containing 3 isoform a protein_id : NP_082860.2

name	Tat (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122769 CCDS:CCDS22658.1 GeneID:234724 MGI:98487
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0016847 - 1-aminocyclopropane-1-carboxylate synthase activity [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0016769 - transferase activity, transferring nitrogenous groups [Evidence IEA] GO_process : GO:0006519 - amino acid and derivative metabolism [Evidence IEA]; GO:0009074 - aromatic amino acid family catabolism [Evidence IEA]; GO:0009072 - aromatic amino acid family metabolism [Evidence IEA] codon_start : 1 product : tyrosine aminotransferase protein_id : NP_666326.1

name	Chst4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982528 CCDS:CCDS22659.1 GeneID:26887 MGI:1349479
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008146 - sulfotransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA] codon_start : 1 exception : mismatches in translation function : directs expression of 6-sulfo sialyl Lewis X, an L-selectin ligand displayed by CD34 note : HEC-GlcNAc6ST; high endothelial cell GlcNAC-6-sulphotransferase product : carbohydrate (chondroitin 6/keratan) sulfotransferase 4 protein_id : NP_036128.2

name	Zfp612 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31559871 CCDS:CCDS22660.1 GeneID:234725 MGI:2443465
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : zinc finger protein 612 protein_id : NP_780689.2

name	Gm1467 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94383819 GeneID:384866 MGI:2686313
definition	codon_start : 1 product : similar to Transducin-like enhancer of split 2, homolog of Drosophila E(spl) protein_id : XP_357906.4

name	Calb2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34098931 CCDS:CCDS22661.1 GeneID:12308 MGI:101914
definition	GO_component : GO:0005921 - gap junction [Evidence IDA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA] codon_start : 1 note : calretinin product : calbindin 2 protein_id : NP_031612.1

name	BC025546 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981920 CCDS:CCDS22662.1 GeneID:234728 MGI:2384580
definition	codon_start : 1 product : hypothetical protein LOC234728 protein_id : NP_666327.2

name	Hydin (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46361984 GeneID:244653 MGI:2389007
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : hydrocephalus 3 product : hydrocephalus inducing protein_id : NP_766504.3

name	LOC100041884 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041884
definition	number : 2 pseudo : _no_value

name	LOC100041884 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041884
definition	number : 1 pseudo : _no_value

name	Gm1943 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:89886348 GeneID:384864 MGI:3037801
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gene model 1943, (NCBI) pseudo : _no_value transcript_id : NR_002928.1

name	LOC668089 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149259031 GeneID:668089
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins product : similar to Larp2 protein pseudo : _no_value transcript_id : XR_033068.1

clone name	MSMg01-522K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-159O23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-541O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-338N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-402M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-338A02
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-303K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070J14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288D03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-207B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-293D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-169I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-161O24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-265L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-360H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-489D22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-231K14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-351H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-268I14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-078K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057D23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-052B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331N12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144G07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-087I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-336H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-071P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-074A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-218D03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-411O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-235H12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-350C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-260F04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-182H21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-328G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-147H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-067B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-178P19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-289M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-064C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392G21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-340H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-301H18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-400J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-235L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-106I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139P01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-399P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-076K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080C23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-163O20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-312B21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-159J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-112I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354K07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535O17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-048P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-101C09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-346M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-463B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-297F05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-510H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-498G03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-412B02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-463H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-194F15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-495M24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-506F11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-527E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029A15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339D09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069O03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-038B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036M17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285A01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-093L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224I21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-339L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235K22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-016M20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-095H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218L23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-071I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120B21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-178F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107K09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149M06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-252I04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-142J13
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-260F04.T7 (MSMg01no260_f04.b1)	MSMg01-260F04.TJ (MSMg01no260_f04.g1)
ACC	AG403020	AG403021
length	834	923
length of high quality (start - end)	153 (68 - 220)	97 (73 - 169)
definition	CHROMAT_FILE: MSMg01no260_f04.b1 PHD_FILE: MSMg01no260_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:23 2005	CHROMAT_FILE: MSMg01no260_f04.g1 PHD_FILE: MSMg01no260_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:23 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC TTACCCTTGTCTGCATCAGGTACCACCTGAAACCCATGTCAACTTTGCAA AAATGATTCTATTGTATGTGTGAAGAGAAAAGCATACAGACTAACAAGGG AAGTCAATCAGTATAGAAATTTACTTATTAAGAGATTAAATCAATTAAGT ATTAAAATCAATTTTGTTCNTGATANTCNAAAGGTATTTCTTACTAAAAC ACTGATGTAGCCCAGCAGTAGATGCATATTAAATACAATATTAAAGCAGA AATGACCATAAAAGATGTCAACTGCTTACAAGGATGCGTCTATATAATAA CAAACCAGTTGGCGATTTCTATAGGTCGACACTAATAAGNGGCATTATTC AATGCTGCGGTGGGTTGGCCTCCTATATTTCGANATGGAACGATAATCCT CTTGCNTAATGATAAACAGTCACGGCCTTGTTCTTGGTTCTCCACCGTCC TATGGTCTATAGGGTCTTGCTGGCTGCTCTTTGCTTAGGCNTTCCGTACG GCATGGTGGGTGGCCGGTTCAATAACCTACTCTTATCCTTTACAGCGNCT GTACTTCCGCGCCCTCATACAGGCCTGTATTAGATCGGTCNCCCCTAGCT CATTCACGCAGGCCCTNTTCCCTCGCTGGAAGTCTAGTGGGTCACTCTAT ATGTTGGCGCCAGAGTGCTTCTACCAATTTCCTCCATGACCCTCTTCCCG CCATCGTGTCACTTCCGTGCGTTTTGTTTCCTCCTCGCTCGAGTTGTGTC TTCTTGTATTCTCTTCCTTAATGTTCCTGGTATN	GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXTCGGAGCTGCGACTTCCTTAGCTGCCAA CATCTTAAGGTCACTCTGGTGCTGCCTCTGCCACTGCAANACCTGGTTGC TCATTTCCTCCAGTTATTTTGTCAAAGTTGTGCATCCANTCCAGGAAGTG CNAAGTGAGGGGGATTGGGGGAGGGGTAAGNAGTAATTTTACTTTTTTNT CCCTCATCTCTCCTCTATCTTTTTTTTCTCTTTTATTTTCTACTATTTTT TATTTACTTATATTTCTTCTCTTTTAAATTTTTTTTATCTATTTTTTATT TTTTCTCTTTTTTTTTTAACTCCCAATTTTCCCATAAACTTTTTTTTTTT TTCCCCCCCCCCCCCACCCCTGTTTAATTATGTCCTTTCTCATCCCTTTT TGTACCCCCCCCCCCCCTATAAATAATAAAAAAAATAATACTTTCTTATT TTTACACATTTCTTATTTCAATCCTACCCATTTTTTTTTCTTCTATACTA TTTAACATCATACATTTTTTGTTCCTCTTTATTTTCTTTCCTTATTTTTT TTTATTTATATTCCTCCTCATCTTTTATCTCATTTATGCTTTTTTTCTCA TTTTTATCTTACCTTTTATTTCCTGATTTACACATTTGTATTTTTACACC CTTTATTTCGTTCGCGTTATTTATTCTGTAATTTATCCTCGCTATTTTTT TCTTTCTTCTTCCTTCTGTTTTTTTCTGCACACTTATCCTTTCCTCTATA TTCTCTTTGTCCCGAGTTTTTTAGCCCACTCCCTACCTATAACACCAATT ATGCGTCTCTATATTATTTCTTTCCTGTTCCCCCTCATATCTCATAGCTA CTCATACCCTCTATTAATTTATN
quality values	Open. Hide. 37 41 41 41 19 11 9 9 9 14 15 15 22 24 33 33 48 44 47 59 31 30 30 30 30 21 21 11 11 11 12 12 13 12 12 10 10 10 13 15 18 32 34 34 31 31 31 39 37 37 37 37 21 12 9 8 10 8 10 10 9 9 8 8 8 8 17 16 33 30 28 20 20 24 24 29 33 47 47 35 36 42 37 37 40 50 53 53 50 48 48 48 48 57 57 47 43 43 43 42 41 41 41 41 42 50 59 59 48 48 54 43 43 47 48 47 57 44 57 44 43 43 43 43 43 46 57 57 57 57 57 57 57 57 57 48 48 32 30 30 41 41 41 48 54 57 54 50 68 54 50 50 50 54 43 40 40 40 40 40 48 54 54 50 50 34 34 28 23 25 43 43 50 50 50 50 57 57 59 59 48 48 48 48 48 48 41 41 40 39 39 18 15 9 9 9 9 19 16 16 13 19 27 34 25 34 31 43 43 48 48 39 42 30 25 19 19 8 3 0 3 15 23 15 3 0 3 3 0 3 10 10 10 15 17 22 22 19 17 9 7 7 6 6 7 11 19 37 37 33 29 18 20 20 28 24 26 28 20 29 22 22 15 19 8 6 6 8 8 12 23 21 17 9 9 9 17 9 9 9 19 17 21 18 16 12 11 8 8 13 23 27 28 28 28 15 15 8 8 8 22 20 22 23 16 14 14 19 22 28 18 14 14 15 23 19 17 8 6 6 8 8 15 17 12 14 16 20 22 36 29 27 22 21 15 8 8 8 10 8 8 17 21 28 30 23 18 15 12 10 13 14 19 17 15 9 9 9 8 9 12 9 11 14 18 20 23 18 15 13 8 8 8 15 8 10 8 8 15 10 9 9 9 15 17 30 18 18 3 0 3 6 7 10 10 10 10 19 8 9 9 13 10 9 10 7 13 7 9 9 9 9 9 8 14 8 8 8 8 8 13 13 8 8 8 8 10 19 15 8 6 6 3 0 3 13 13 15 15 8 6 6 6 6 6 7 12 8 8 6 6 8 8 12 3 0 3 8 11 12 17 8 8 9 15 19 15 15 8 8 7 6 8 8 8 8 7 7 13 8 8 9 8 8 8 8 9 9 14 9 7 11 6 6 8 6 8 11 8 9 8 8 7 7 6 6 8 8 6 6 13 7 9 8 8 8 10 15 15 17 8 8 8 8 8 8 13 7 6 8 8 6 6 10 8 6 6 8 8 3 0 3 9 9 9 9 9 9 9 9 9 9 9 9 8 8 15 15 14 12 12 10 15 14 10 9 9 6 6 6 6 8 8 9 10 8 8 10 8 8 8 8 8 6 6 8 8 10 9 9 11 11 12 10 10 8 3 0 3 6 8 8 9 13 17 8 8 9 14 14 19 16 19 19 8 8 8 6 6 8 8 8 14 12 11 12 9 9 9 8 8 8 10 8 8 6 7 7 7 3 0 3 7 6 6 6 6 6 8 6 6 10 8 9 8 8 8 8 8 8 8 8 6 8 7 3 0 3 8 6 7 6 6 6 6 11 11 20 14 11 11 8 8 8 6 6 10 7 9 9 9 9 9 8 10 8 6 6 6 6 8 8 8 8 13 17 10 6 6 8 6 6 8 10 10 10 9 9 9 6 8 6 6 8 8 10 13 9 7 8 8 8 8 8 8 8 8 6 8 8 12 16 18 13 10 8 9 8 8 9 9 8 8 8 8 11 12 8 8 8 8 8 8 6 6 8 8 8 8 6 8 8 10 10 8 12 8 8 9 10 9 9 9 7 7 6 8 8 8 8 10 8 8 8 6 6 8 6 6 6 7 11 19 8 8 10 8 6 6 8 10 16 9 9 9 9 9 9 8 8 7 7 12 10 10 10 8 10 10 11 13 11 3 0	Open. Hide. 9 9 9 9 23 17 15 10 10 12 18 22 33 33 33 37 37 41 41 48 48 48 48 41 37 27 23 12 9 9 12 11 10 10 10 11 15 15 27 21 26 22 37 37 41 32 28 23 23 34 34 53 59 59 59 41 26 13 10 15 8 8 8 8 8 8 8 8 20 20 30 33 34 37 43 44 44 50 41 39 37 30 27 19 24 20 19 18 19 22 10 8 8 15 23 39 47 27 25 16 11 11 10 17 19 30 29 50 53 35 35 35 35 35 30 48 48 41 41 34 30 19 17 26 20 31 35 37 37 30 33 33 33 31 30 39 27 27 3 0 3 15 18 29 37 41 47 41 39 22 17 8 8 8 10 17 19 27 37 42 39 39 27 15 6 6 6 8 15 21 30 28 28 14 21 16 16 21 21 24 29 23 23 14 7 7 8 3 0 3 6 7 8 18 11 11 11 11 17 15 3 0 3 25 21 23 16 19 10 14 17 16 22 17 19 12 12 11 11 18 27 29 30 28 21 19 9 9 10 3 0 3 10 11 10 8 8 8 8 8 8 8 10 8 9 9 16 3 0 3 8 12 8 8 8 9 8 8 8 8 8 8 8 10 8 8 6 6 7 7 8 8 19 15 18 12 11 8 8 8 8 10 11 12 10 12 8 8 8 8 6 6 8 8 8 9 10 10 10 14 9 9 8 8 12 11 11 11 10 9 9 9 9 8 8 8 8 8 8 8 8 8 8 10 6 6 8 10 8 8 8 8 8 8 8 8 8 8 8 7 6 8 10 17 25 15 9 9 9 17 19 17 12 9 9 9 10 10 11 11 11 12 12 13 13 12 6 6 6 6 8 6 6 6 6 8 8 13 18 9 8 8 6 6 8 8 9 8 6 6 6 6 8 11 12 20 26 25 27 8 8 6 6 8 6 8 8 8 10 10 11 14 9 8 8 7 6 13 10 10 7 7 8 8 6 6 8 8 8 8 7 8 6 6 8 8 11 10 10 9 10 9 9 11 11 16 19 28 18 13 8 8 8 8 8 8 8 8 9 11 11 11 11 8 10 8 8 8 8 6 6 6 7 13 12 9 9 10 8 8 8 8 8 8 10 10 8 8 8 8 6 6 9 9 8 6 7 7 10 10 10 10 9 11 8 10 10 8 8 8 8 6 7 8 6 8 12 10 11 9 9 9 8 8 6 6 8 8 8 6 6 10 19 14 24 16 10 10 9 9 9 7 7 8 8 10 8 8 8 8 8 13 18 12 9 9 9 9 11 9 9 8 6 8 8 10 10 16 11 9 8 8 6 6 8 6 9 11 14 11 11 10 10 13 11 10 10 11 11 12 10 8 8 8 10 8 17 17 16 19 8 8 6 7 10 13 7 6 6 6 8 8 8 9 10 11 10 8 8 6 6 8 6 12 12 8 8 8 8 8 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 6 8 8 10 8 6 6 8 8 10 7 6 8 8 8 9 9 9 8 8 8 6 6 8 7 7 8 11 12 8 8 8 7 6 8 8 10 9 9 10 10 13 15 11 6 6 8 6 6 8 6 6 7 11 15 8 8 8 9 11 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 7 10 7 9 9 9 9 9 9 11 10 6 6 7 7 8 8 12 15 12 12 8 8 8 8 8 8 8 6 6 8 8 11 8 6 6 6 6 8 13 15 22 28 15 13 8 8 6 6 8 8 9 9 8 8 6 6 6 6 8 8 9 7 7 9 8 8 8 8 8 6 6 6 6 10 11 12 15 9 9 9 9 9 8 6 6 6 6 8 8 18 18 11 9 9 13 10 10 6 6 8 8 8 8 8 8 8 9 10 8 6 6 8 8 8 8 6 6 6 6 6 6 6 6 9 9 9 8 10 7 6 8 8 9 8 8 6 6 6 6 11 10 10 9 6 6 6 6 6 8 10 9 9 9 9 6 6 6 7 10 10 10 8 10 10 8 8 8 8 8 6 7 8 9 9 10 9 8 8 8 13 8 8 6 6 8 8 12 10 10 9 9 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no260_f04.b1 MSMg01no260_f04.b1 CHROMAT_FILE:
MSMg01no260_f04.b1 PHD_FILE: MSMg01no260_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:23 2005
         (153 letters)



>mm_chr8_111905690_111906242
          Length = 553

 Score =  292 bits (151), Expect = 6e-84
 Identities = 151/151 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtaccacctgaaacccatgtcaactttgcaaaaatgattctattgtatgtgtgaagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtaccacctgaaacccatgtcaactttgcaaaaatgattctattgtatgtgtgaagag 260

                                                                       
Query: 61  aaaagcatacagactaacaagggaagtcaatcagtatagaaatttacttattaagagatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaagcatacagactaacaagggaagtcaatcagtatagaaatttacttattaagagatt 320

                                          
Query: 121 aaatcaattaagtattaaaatcaattttgtt 151
           |||||||||||||||||||||||||||||||
Sbjct: 321 aaatcaattaagtattaaaatcaattttgtt 351


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 153
Length of database: 553
Length adjustment: 8
Effective length of query: 145
Effective length of database: 545
Effective search space:    79025
Effective search space used:    79025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information