BAC Information

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BAC

Clone NameMSMg01-260H14
Chromosome8 (Build37)
Map Location 17,429,161 - 17,607,428
singlet/doubletdoublet
Overlap geneCsmd1
Upstream genenone
Downstream geneLOC665638, LOC100040466, Mcph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260H14.T7 (MSMg01no260_h14.b1)MSMg01-260H14.TJ (MSMg01no260_h14.g1)
ACCAG403130AG403131
length753741
length of high quality
(start - end)
285 (115 - 399)129 (170 - 298)
definitionCHROMAT_FILE: MSMg01no260_h14.b1 PHD_FILE: MSMg01no260_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:35 2005CHROMAT_FILE: MSMg01no260_h14.g1 PHD_FILE: MSMg01no260_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,607,144 - 17,607,428)(17,429,161 - 17,429,289)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAAT
TCTGCTTATTGACTTCCTCTCTGTGGCTTGGTCAACCTGCTTTCTTCATC
CAGCCTAGGTCTAGTTGCCTAAGAACAGTGTCATCCACAGTGGCCTGGAT
CCTCCCACATTGATCATCAATACAAATCACCTGAGGCAATAACTTGAAAC
ATGACCAGACTCAATTTGTTGAGACCATGGTTCAGTTGAGGTTTCCTGTT
CCCAAGTTGATTTATTTTGTGTTATGTTGATGGCAAAATCAACTTAAACA
AAGTTTAACTTATGGTCCCATTCTCAAACAGGAAAATGGAGATAGGGTAA
TAGAATATAAACATGCAGACTATGGAAAGTGACAGAGCATTTTGTCCCAA
AGGAAAGAGGACAACCGGCCCATCATATTCTTAGTGCTGCAAATGCTTCT
GGCCTTGGCTTCCTTAAGGGAGTCTACCTTCCTGTCCTAGACTCTATTCA
CCTTAAGATGGCATGAAAGTTAATTGGGCGCTTCTGGAACCAAACACTAT
AAGGCTACATGAGATCCTTATGTTTTGAAGTCCTAAAGCTTTGTTAAATA
TCAGTTACCACAGTTACAAAGATACCCTGTAAAGCCAAAGAAATTGTGAA
GATAGAATCAATTGCTTTGATAAAAATAACTTCACAATAAACACAGCGTG
CATTTCTACTTATTAGAAATGAATCAAATCTCTGGGCCTTGGAGTAAAAT
TTA
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTGATGATGAACTGTGATGAG
GAAATATAAACCAAATAAACTGTGTTCTTAAATTGCTTTTGGTCCTGGGG
TTTCATCATAGTAACAGCAATATGAACTAAGTCACACGTACATACAAAAC
GACAAGTAGATATAAATTATAGGTATATAGTTGCAGATAAGAGACTAGAA
GATAGAAAGATAAGTCATAAATGGATTGATGTGTGGTAGATATTGGTAGA
GCTGTTATAAGTAATGAATTTAGAATAAGGAAATATAATAAGGCTATATA
ACACATTTCCTTTGGTATAAAGGGCACCTTTTAAGTTAGTGGCTGTCAGC
ACATTCATATGTGCACAAGCCCCAACATCTAATTCTATGGGAATCAAATT
AAAACCCCATACCCAGCATGTCCTTTCCAGAAAACCTTGTTTGATAGCAA
TCCTCCAACCATTAACTTCCTTTTTGTCCTTATTCCTGTAATGCCTCAAG
CATTGAAGTCAGCATATAGATATCCTATTTAGGACACAGCATGTATTAGA
TTTTATAGATATTAGGTACTTGATGCTTAATCATAGGGAAGATGCATATC
GAAACAAACCTGAGATTCCATCTCAGACCAATCAGAATGGTTAAGAAAAA
AAATTCTTGCTAACAGCAGATGTTTGTTAAGTATGTGGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_h14.b1 MSMg01no260_h14.b1 CHROMAT_FILE:
MSMg01no260_h14.b1 PHD_FILE: MSMg01no260_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:35 2005
         (285 letters)



>mm_chr8_17606778_17607462
          Length = 685

 Score =  513 bits (265), Expect = e-150
 Identities = 280/285 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgcctaagaacagtgtcatccacagtggcctggatcctcccacattgatcatcaataca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ttgcctaagaacagtgtcatccacagtggcctggatcctcccacattgatcatcaataca 592

                                                                       
Query: 61  aatcacctgaggcaataacttgaaacatgaccagactcaatttgttgagaccatggttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 aatcacctgaggcaataacttgaaacatgaccagactcaatttgttgagaccatggttca 532

                                                                       
Query: 121 gttgaggtttcctgttcccaagttgatttattttgtgttatgttgatggcaaaatcaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gttgaggtttcctgttcccaagttgatttattttgtgttatgttgatggcaaaatcaact 472

                                                                       
Query: 181 taaacaaagtttaacttatggtcccattctcaaacaggaaaatggagatagggtaataga 240
           || |||||||||||||||||||||||  | ||||||||||||||||||||||||||||||
Sbjct: 471 tagacaaagtttaacttatggtcccaggcacaaacaggaaaatggagatagggtaataga 412

                                                        
Query: 241 atataaacatgcagactatggaaagtgacagagcattttgtccca 285
           ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 411 atataaacatggagactatggaaagtgacagagcattttgtccca 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no260_h14.g1 MSMg01no260_h14.g1 CHROMAT_FILE:
MSMg01no260_h14.g1 PHD_FILE: MSMg01no260_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:35 2005
         (129 letters)



>mm_chr8_17428961_17429489
          Length = 529

 Score =  250 bits (129), Expect = 3e-71
 Identities = 129/129 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatgaactaagtcacacgtacatacaaaacgacaagtagatataaattataggtatata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatgaactaagtcacacgtacatacaaaacgacaagtagatataaattataggtatata 260

                                                                       
Query: 61  gttgcagataagagactagaagatagaaagataagtcataaatggattgatgtgtggtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgcagataagagactagaagatagaaagataagtcataaatggattgatgtgtggtag 320

                    
Query: 121 atattggta 129
           |||||||||
Sbjct: 321 atattggta 329


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 129
Length of database: 529
Length adjustment: 8
Effective length of query: 121
Effective length of database: 521
Effective search space:    63041
Effective search space used:    63041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)