Query= MSMg01no260_i01.b1 MSMg01no260_i01.b1 CHROMAT_FILE:
MSMg01no260_i01.b1 PHD_FILE: MSMg01no260_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:37 2005
(421 letters)
>mm_chr8_11364878_11365701
Length = 824
Score = 750 bits (388), Expect = 0.0
Identities = 412/422 (97%), Gaps = 5/422 (1%)
Strand = Plus / Minus
Query: 4 ggaattcatctgcctctctttcctgaaggctgagattaaaggcgtgcaccctcacatctg 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ggaattcatctgcctctgtttcctgaaggctgagattaaaggcgtgcaccctcacatctg 628
Query: 64 gctatcttggtagaaatatatgagcatatttggtcagggtggtgagaaattaaagcagag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gctatcttggtagaaatatatgagcatatttggtcagggtggtgagaaattaaagcagag 568
Query: 124 tttctgaagcatggttctggtcttcagggagaggtttgccctactctactctgtc----t 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 567 tttctgaagcatggttctggtcttcagggagaggtttgccctactctactctgtctgttt 508
Query: 180 gtctgtccgtctcccccactgctgaggcagcagatgctgaagagaactgaatctgatgat 239
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gtctgtccgtct-ccctactgctgaggcagcagatgctgaagagaactgaatctgatgat 449
Query: 240 cagggtctcagaatggagggcagacaagctcgagagccatggctagaggagagagtatct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cagggtctcagaatggagggcagacaagctcgagagccatggctagaggagagagtatct 389
Query: 300 agagagaaatagaaactgacacgagaatcaaagagcctgcttcccctgctaatgcatggc 359
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 388 agagagaaatagaaactgacaagagaatcaaagagcctgcttctcctgctaatgcatggc 329
Query: 360 tgcccttgggtttctccctctagtcggtggtgttgggaatgagccctacctaagccttca 419
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 328 tgcccttgggtttctccctctagccggtggtgttgggaatgagccctacctaagccttca 269
Query: 420 tg 421
||
Sbjct: 268 tg 267
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 824
Length adjustment: 9
Effective length of query: 412
Effective length of database: 815
Effective search space: 335780
Effective search space used: 335780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no260_i01.g1 MSMg01no260_i01.g1 CHROMAT_FILE:
MSMg01no260_i01.g1 PHD_FILE: MSMg01no260_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:37 2005
(501 letters)
>mm_chr8_11200450_11201351
Length = 902
Score = 909 bits (470), Expect = 0.0
Identities = 494/502 (98%), Gaps = 1/502 (0%)
Strand = Plus / Plus
Query: 1 tcacctctgattggtacttatcaaatccaactaaacgttgaggtcgctcaccacatggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacctctgattggtacttatcaaatccaactaaacgttgaggtcgctcaccacatggaa 260
Query: 61 gaacatcttgtcctgaacttgaaggagcttaccctacaaattccattacaaattccagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaacatcttgtcctgaacttgaaggagcttaccctacaaattccattacaaattccagct 320
Query: 121 ttaaggg-aaaaaaatctaattgtgtttaaggaggcagtttggttcattataccaggctg 179
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaagggaaaaaaaatctaattctgtttaaggaggcagtttggttcattataccaggctg 380
Query: 180 ctggttccaagcaaaaatcccattttcggctattaaccttataacgaagcccaccccagc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggttccaagcaaaaatcccattttcggctattaaccttataacgaagcccaccccagc 440
Query: 240 cccggctgaggggtaagaagcagactctaatttccataactaaactagactgtttgctaa 299
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccggctgaggggtaaggagcagactctaatttccataactaaactagactgtttgctaa 500
Query: 300 tgctgcatctgacaatttcccatatcctagctgttgagcacatgacacttcgggatgttt 359
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 501 tgctgcatctgacaatttcccatatcctagctgttgagcacatgatactttgggatgttt 560
Query: 360 agcaaatgacctgatctgaaaaacaagatagctgcagaattcctcacggcagcctccaaa 419
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 agcaaatgacctgatctgaaaaacaggatagctgcagaattcctcacggcagcctccaaa 620
Query: 420 acagagaatacagagaggattgtctgcaggagagagtggccatgtctgggcaggagcagt 479
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acagagaagacagagaggattgtctgcaggagagagtggccatgtctgggcaggagcagt 680
Query: 480 aagaggctcctcctgccccatc 501
|||| |||||||||||||||||
Sbjct: 681 aagaagctcctcctgccccatc 702
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 902
Length adjustment: 10
Effective length of query: 491
Effective length of database: 892
Effective search space: 437972
Effective search space used: 437972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
