BAC Information

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BAC

Clone NameMSMg01-260I07
Chromosome8 (Build37)
Map Location 8,085,697 - 8,086,039
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039836, Efnb2, 9430010O03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260I07.T7 (MSMg01no260_i07.b1)MSMg01-260I07.TJ (MSMg01no260_i07.g1)
ACCAG403162AG403163
length868737
length of high quality
(start - end)
---343 (83 - 425)
definitionCHROMAT_FILE: MSMg01no260_i07.b1 PHD_FILE: MSMg01no260_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:38 2005CHROMAT_FILE: MSMg01no260_i07.g1 PHD_FILE: MSMg01no260_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTGTTGTGTTTTCTTTTTCTTTTTTTTTTTTTCTTTGGTCTTGGGGGCG
GGCCGGGGCGCCGGGGTCGNGGGGTTAANGTCCTGGGGTGGGCGCGGTTG
TGGTGGGTGCGCGTGGGTGGCGTCCGGGTGTGGGGGCCTTGTGGTATTTA
ATTGCGGTGGGGTGGCGGGGGGGGGGGGGGGGGGGGGGGAGGGAGGTTGA
TGGTTGGGCGTGTCCGGCTCGTCCTCCCCGGCTCGGTCGGGCGGTGGGGG
GGCCGGTCGGCGCGGCGTGCGCGTGGGGACCCTTGGGTCCCGAGTCACCC
CAGGAGGTGACTGGTGTTGCCGCGTTGTGTTTCTCGCGGCGTGGGGTCTG
GCGTGGGGCGGAAGTGTTTCCNNNNNNNNNNNNNNNNNNNNNNTTTTGTC
NCGGGTGGGCCNNCNCCCCCCCCCCCCNNNCCGGATAGAGGGGGGTCTTT
TGGGGGTTCTTGTGCTTCCTACGTGGCGTGAGGGCCTCCCTTATAAATTG
GCGGGGCGGGCCTATTCGGACTTCACCTATTTGTGGTGCGAGGAATAGGG
GCGGGTAATTTCCTTCCCTGGGACTTTTTTTTCGCCCCCTTACAGCGTTC
AGGAGGTTTCAAAATGGGGATGAGGGCTTGGGCTCCCCTTGGCTCCCCCG
GGTTTTTACCTATGGGGGCTCCTCCCCCGGCATTTTGAGCCCCCCGGGGG
GTTCCCCCCCCCATTATCAGCTCCGGTCCCGGGGGGCCCGGGGATTTTTT
GTCGCGTTTTTCCCCCGCCCGCTTTTGTTCCCCGAGGGCGAGGAGAGTTT
GTGTTATCGCGGGGGGGGGGGGTGGTATCCCTTTTGGGGCGCCCCCCTCT
GGGGGGGGTCCCGGGGGG
TCCCCTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATATCTTGTTTCATCAC
ACATTGTAAGAGTGTTTATTTCAAGCATTTCAATATTGCTATTTATTTTG
TATTTCATTTTTCAGGTTAAAAAATATCAAAAAATGTGTCTGCTAGGTAC
ACTTTTAAGTTCTGTGTGAGTTATGTACATGTATCTTTTATCTTCATTGA
TTTAATGTTTTAATAAAGAATACATCTGATATACATATAACCACAGTTAG
CTAACTGATCTTATACAGGATGGACATATCAAAAGGCTTTACAATCTTTA
TCTATGTCATAGATTCTATGATATGTTTTATGAAAGACATTTATCTTCAA
GACATAAAACTTCAAAATGTCTGTCCACCACGAGACACCAAAGTAATTTG
AATAATAAAACATTTTCAAATAAAATATACCAATATTTTATGAGTAGATT
CATGAGATTAAAAACAATCACTTGTTATAGAATTTGTGGCAGTGACTAAA
GGAAGTCATATCATATCAACGTCTGCTCAAGAATATATCAATGCGTTGTC
GACATGCAGGGACAGTTCTTTTCATGGTACTGTCCAAGCCAGAGTACTTT
ATGAAATAAATCATGTCCGGTGATTATACCACACTACTTAAGCATATTGT
GAAAAAGATCCTGAGTGCGAAAATAGCGCCTTTCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_i07.g1 MSMg01no260_i07.g1 CHROMAT_FILE:
MSMg01no260_i07.g1 PHD_FILE: MSMg01no260_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:38 2005
         (343 letters)



>mm_chr8_8085497_8086239
          Length = 743

 Score =  632 bits (327), Expect = 0.0
 Identities = 339/343 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatatcttgtttcatcacacattgtaagagtgtttatttcaagcatttcaatattgctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tatatcttgtttcatcacacattgtaagagtgtttatttcaagcatttcaatattgctat 484

                                                                       
Query: 61  ttattttgtatttcatttttcaggttaaaaaatatcaaaaaatgtgtctgctaggtacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ttattttgtatttcatttttcaggttaaaaaatatcaaaaaatgtgtctgctaggtacac 424

                                                                       
Query: 121 ttttaagttctgtgtgagttatgtacatgtatcttttatcttcattgatttaatgtttta 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 423 ttttaagttctgtgtgagttatgtacatgcatcttttatcttcattgatttaatgtttta 364

                                                                       
Query: 181 ataaagaatacatctgatatacatataaccacagttagctaactgatcttatacaggatg 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 363 ataaagaatacatctgatatacatgtaaccacagttagctaactgatcttatacaggatg 304

                                                                       
Query: 241 gacatatcaaaaggctttacaatctttatctatgtcatagattctatgatatgttttatg 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 303 gacatatcaaaaggctttataatctttatctatgtcatagattctatgatacgttttatg 244

                                                      
Query: 301 aaagacatttatcttcaagacataaaacttcaaaatgtctgtc 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 aaagacatttatcttcaagacataaaacttcaaaatgtctgtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)