Query= MSMg01no261_g10.b1 MSMg01no261_g10.b1 CHROMAT_FILE:
MSMg01no261_g10.b1 PHD_FILE: MSMg01no261_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:47 2005
(543 letters)
>mm_chr8_109506927_109507870
Length = 944
Score = 1006 bits (520), Expect = 0.0
Identities = 538/544 (98%), Gaps = 1/544 (0%)
Strand = Plus / Minus
Query: 1 gcccgcatcccagtaaataagcaaagtttctctagagcgcgctccagccttgtcttttca 60
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gcccgcatcccagcaaataagcaaagtttctctagagcgcgctccagccttgtcttttct 685
Query: 61 catttgtatcttacaagcgataaccatttgcaagtgtatttcaagagagagtaggaacaa 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 684 catttgtatcttacaagcgatagccatttgcaagtgtatttcaagagagagtaggaacaa 625
Query: 121 actccttttcagcagtgagactgagactctttaccctagtcttgatcacctgagactgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 actccttttcagcagtgagactgagactctttaccctagtcttgatcacctgagactgag 565
Query: 181 tctcatacagcactcatggtcatcatctgactggaaggaagggtgggacccctaccccaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tctcatacagcactcatggtcatcatctgactggaaggaagggtgggacccctaccccaa 505
Query: 241 atattacgcagcatttgacttttgctaagttgaaagttctgggcttcatcacagacagca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atattacgcagcatttgacttttgctaagttgaaagttctgggcttcatcacagacagca 445
Query: 301 tcttcgcacaatcattgtcatactttgttctcaatcgttcccttcctgatttaccctccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcttcgcacaatcattgtcatactttgttctcaatcgttcccttcctgatttaccctccc 385
Query: 361 cctctactgtcccctttccctccagctggctca-tttttgtcccaactgagccccctgtc 419
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 384 cctctactgtcccctttccctccagctggctccctttttgtcccaactgagccccctgtc 325
Query: 420 tgctttcctcttatatataactcattgccactttctatctcattgaagatcatgttcctt 479
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgctttcctcttatatataattcattgccactttctatctcattgaagatcatgttcctt 265
Query: 480 tctcataatccctgtcctagttttcacacatatagatagtctgctataattttagcactt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctcataatccctgtcctagttttcacacatatagatagtctgctataattttagcactt 205
Query: 540 ccca 543
||||
Sbjct: 204 ccca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 944
Length adjustment: 10
Effective length of query: 533
Effective length of database: 934
Effective search space: 497822
Effective search space used: 497822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no261_g10.g1 MSMg01no261_g10.g1 CHROMAT_FILE:
MSMg01no261_g10.g1 PHD_FILE: MSMg01no261_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:47 2005
(324 letters)
>mm_chr8_109340155_109340878
Length = 724
Score = 588 bits (304), Expect = e-172
Identities = 319/324 (98%)
Strand = Plus / Plus
Query: 1 ctcctaggactaaaatgcttctaccgttaatgccaggggcatggaagttgctcctgctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcctaggactaaaatgcttctaccgttaatgccaggggcatggaagttgctcctgctgg 260
Query: 61 ccttgggttgggagttccaggtccaaatcagagaagtagcttactggatcttactgaaca 120
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 ccttgggttgggagttctaggtccaaagcagagaagtagcttactggatcttactgaaca 320
Query: 121 atggctctccgtaggttgcagtttctctagggcttgtcttcccttccaaactgcacgttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggctctccgtaggttgcagtttctctagggcttgtcttcccttccaaactgcacgttt 380
Query: 181 atgtaatggatgcgcgacttgacggaatgccagcgcatggcagatgcaattatatttcag 240
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtaatggatgcgcgacttgacagaatgccagcgcatggcagatgcaattatatttcag 440
Query: 241 aacaatcctcctccttctaatctctctgccatcactgattaattagatactttgaactct 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacaagcctcctccttctaatctctctgccatcactgattaattagatactttgaactct 500
Query: 301 gcccaactgtttgaaagctgtgaa 324
||||||||||||||||||||||||
Sbjct: 501 gcccaactgtttgaaagctgtgaa 524
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space: 225225
Effective search space used: 225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
