Query= MSMg01no261_p21.b1 MSMg01no261_p21.b1 CHROMAT_FILE:
MSMg01no261_p21.b1 PHD_FILE: MSMg01no261_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:31 2005
(696 letters)
>mm_chr8_5375736_5376830
Length = 1095
Score = 1232 bits (637), Expect = 0.0
Identities = 680/695 (97%), Gaps = 5/695 (0%)
Strand = Plus / Plus
Query: 5 gaattccaagatgaaattctgcattttatgagagtggaaaagcatcctgatctgtgcctt 64
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 203 gaattccaagatgaaattttgcatttcatgagagtggaaaagcatcctgatctgtgcctt 262
Query: 65 ccttcttgtttgacttcctagggtctatgtggtgtatatatacagcagtatacagcaagc 124
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ccttcttgtttgacttcttagggtctatgtggtgtatatatacagcagtatacagcaagc 322
Query: 125 caatagccaacatcaaactgaatggagagctattagaagcaatcccactaaaatcaggga 184
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 323 caatagccaacatcaaactgaatggagagctactagaagcaatcccactaaaatcaggga 382
Query: 185 caagacaaggctatccattctctccctatcgattccttatagtacttgaagttctagcta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 caagacaaggctatccattctctccctatcgattccttatagtacttgaagttctagcta 442
Query: 245 ccaataacaacaaaagtagatcaaggggatgcaaattataaaggatgaagtcaaggtatc 304
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 443 ccaataacaacaaaagtagatcaaggggatgcaaattagaaaggatgaagtcaaggtatc 502
Query: 305 actatttgtgtgtgatatgtaagtgaccttcacaattctaccagagaactcctatagctg 364
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 503 actatttgtgtgtgatatgtaagtgaccttcaaaattctaccagagaactcctatagctg 562
Query: 365 ataaacaacttcagcaaagttgttgaatatttaactcaaataatcagtaaccttccttta 424
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 563 ataaacaacttcagcaaagttgttgaatatttaactcaaataatcagtaacgttccttta 622
Query: 425 tacaaatgacaaatggctgagaaagaaattaggaaagcaacacccttcataatagccaca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tacaaatgacaaatggctgagaaagaaattaggaaagcaacacccttcataatagccaca 682
Query: 485 agtaagagaaaattctttttc--ctcttttctttctctctcttgtt-gctcatttcttgt 541
|||||||||||||||||||| ||||||||||||||||||||||| | |||||||| ||
Sbjct: 683 agtaagagaaaattcttttttttctcttttctttctctctcttgtttg-tcatttct-gt 740
Query: 542 ctccctctccttttctcattcagcccctcacacagacctgtaaatcaacatacatacata 601
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctccctctccctttctcattcaccccctcacacagacctgtaaatcaacatacatacata 800
Query: 602 tgcccattttataatttaaaagtgaacatcaagctatatgaaatatctacatgaaacttt 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgcccattttataatttaaaagtgaacatcaagctatatgaaatatctacatgaaacttt 860
Query: 662 taccaagcaagtgaaagatctgtataagtccctga 696
|||||||||||||||||||||||||||||||||||
Sbjct: 861 taccaagcaagtgaaagatctgtataagtccctga 895
Score = 161 bits (83), Expect = 2e-43
Identities = 101/107 (94%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 500 tttttcctcttttctttctctctcttgttgctcatttcttgtctccctctccttttctca 559
||||| ||||||||||||||||||||||| |||||||| |||||| |||||| |||||||
Sbjct: 109 tttttactcttttctttctctctcttgtttctcatttc-tgtctctctctccctttctca 51
Query: 560 ttcagcccctcacacagacctgtaaatcaacatacatacatatgccc 606
|||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 ttcaccccctcacacagacctgtaaatcaacatacatacatatgccc 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 696
Length of database: 1095
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1085
Effective search space: 744310
Effective search space used: 744310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no261_p21.g1 MSMg01no261_p21.g1 CHROMAT_FILE:
MSMg01no261_p21.g1 PHD_FILE: MSMg01no261_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:31 2005
(650 letters)
>mm_chr8_5515871_5516920
Length = 1050
Score = 1234 bits (638), Expect = 0.0
Identities = 647/650 (99%)
Strand = Plus / Minus
Query: 1 tccacaaaggaatctcaaatggccaagaagcacttaaagaaatgttcaacatatgtactc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1048 tccacaaaggaatctcaaatggccaagaagcacttaaagaaatgttcaacatatgtactc 989
Query: 61 atcagagaaatgtaaatcaaaatgaacgtgagattccaccttacaccaattagaaagtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 atcagagaaatgtaaatcaaaatgaacgtgagattccaccttacaccaattagaaagtgt 929
Query: 121 ggttcatttacacaatggaatactactcagctattaaaaatctaattgttaagaaatagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 ggttcatttacacaatggaatactactcagctattaaaaatctaattgttaagaaatagg 869
Query: 181 agagggataaagactggactgtaaaatagatttaagaataaaaaaaagaactaccattct 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 agagggataaagactagactgtaaaatagatttaagaataaaaaaaagaactaccattct 809
Query: 241 aaaacaaacaaacaaaaagatgattttattgggtgatagattaaatatactaaaatcagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 aaaacaaacaaacaaaaagatgattttattgggtgatagattaaatatactaaaatcagt 749
Query: 301 gctaaatgaaagcagaaaggtttcattttttaagagataagtttagggacacgggattaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gctaaatgaaagcagaaaggtttcattttttaagagataagtttagggacacgggattaa 689
Query: 361 aattgtcatttatcaggaacagaagcaaatagagtctaatttattgtcatttgacctatt 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 aattgtcatttatcaggaacagaagcaaatagagtctaatttattgtcatttgacctatc 629
Query: 421 ctcatcaagaaacttacaaataattgaagcaaaacataaggacaaacacttcgtacattt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ctcatcaagaaacttacaaataattgaagcaaaacataaggacaaacacttcgtacattt 569
Query: 481 gtttcacctctaatctgaccaaccttaaaggtattttttaagtcaagtaaaagaaccaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gtttcacctctaatctgaccaaccttaaaggtattttttaagtcaagtaaaagaaccaaa 509
Query: 541 tgatatctacgtcacaaacattgcatatccctgtactttgatcaattcttgtcacagaga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tgatatctacgtcacaaacattgcatatccctgtactttgatcaattcttgtcacagaga 449
Query: 601 gttaaataaaaaagacaatgtgcaattaaactgagtttcaatttcttaca 650
|||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 448 gttaaataaaaaagacaatgtgcaatcaaactgagtttcaatttcttaca 399
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
