Query= MSMg01no262_a13.b1 MSMg01no262_a13.b1 CHROMAT_FILE:
MSMg01no262_a13.b1 PHD_FILE: MSMg01no262_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:34 2005
(456 letters)
>mm_chr8_62775099_62775955
Length = 857
Score = 787 bits (407), Expect = 0.0
Identities = 441/453 (97%), Gaps = 3/453 (0%)
Strand = Plus / Minus
Query: 6 gaattctcttctggtcctcatcaccccaacccccagctttcctgttgctttctgccaatg 65
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gaattctcttctggcccttatcaccccaacccccagctttcctgttgctttctgccaatg 598
Query: 66 gtcttttacttgagcccattattgttaacttgaaaaatatatatatgttttcctcattaa 125
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 597 gtcttttacttgagtgtattattgttaacttgaaaaa-atatatatgttttcctcattaa 539
Query: 126 aactactctgctgggtctctctgctatggtcctaaaaggcttccagatcatttacaaacc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 aactactctgctgggtctctctgctatggtcctaaaaggcttccagatcatttacaaacc 479
Query: 186 tgcacctaattcattttagttacagcccaagcatattattgcatacgtcttaaaacatat 245
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 478 tgcacctaattcattttagttacagcccaagcatattattgcatacttcttaaaacatat 419
Query: 246 ttaagcataacatcatttatagtggaaaaac--agatgtaaatgattttgagtgggggat 303
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 418 ttaagcataacatcatttatagtggaaaaacagagatgtaaatgattttgagtgggggat 359
Query: 304 ttgcagtgctgcagttatgtagattcactacttcactgctttgctgaggatgtactttaa 363
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ttgcagtgctgcagttatggagattcactacttcactgctttgctgaggatgtactttaa 299
Query: 364 agcacattttattgaacattgcctggtgcttctttcatttgtgaagtgggcaccaagcac 423
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 agcacattttattgaaaattgcctggtgcttctttcatttgtgaagtgggcaccaagcac 239
Query: 424 taatttctcagggagttccacacctattaagtt 456
|||||||||||||||||||| ||||||||||||
Sbjct: 238 taatttctcagggagttccatacctattaagtt 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 857
Length adjustment: 10
Effective length of query: 446
Effective length of database: 847
Effective search space: 377762
Effective search space used: 377762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no262_a13.g1 MSMg01no262_a13.g1 CHROMAT_FILE:
MSMg01no262_a13.g1 PHD_FILE: MSMg01no262_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:34 2005
(660 letters)
>mm_chr8_62601031_62602090
Length = 1060
Score = 1156 bits (598), Expect = 0.0
Identities = 645/668 (96%), Gaps = 14/668 (2%)
Strand = Plus / Plus
Query: 1 tcctcagcaatattttctgcctagaggagaggcatctggagactttaaactgaaaatacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tcctcagcaatattttctgcctagaggagaggcatctggagactttaaactgaaaatacc 258
Query: 61 aaacactacttaaaaaggagacagaggacgagaataaagtgaatgactgcaaaggaaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aaacactacttaaaaaggagacagaggacgagaataaagtgaatgactgcaaaggaaaat 318
Query: 121 aagataaaagacgtgctgtgagagacagacagtagattgatgggagttagtctgacttgt 180
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 319 aagataaaagacgtgctgt----gacagacaggagattgatgggagttagtctgacttgt 374
Query: 181 aagcatactattggctgaagtataagccaaggttaaatacccctagacatgctccaaatt 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aagcatactgttggctgaagtataagccaaggttaaatacccctagacatgctccaaatt 434
Query: 241 tttattcacttacgttttatcttttcagtttttcgtttaatagtctatgagttcattcaa 300
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 435 tttattcacttactttttatcttttcagtttttcatttaatagtctatgagttcattcaa 494
Query: 301 gaggcgaatgctagggcctttagaggttaactctaacgtgccctttagctagtgaacata 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gaggctaatgctagggcctttagaggttaactctaacgtgccctttagctagtgaacata 554
Query: 361 cacacacttgcatgcatgaacacatacacacacacacatcaggagggagtaaagaagaaa 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 555 cacacacttgcatgcatgaacacatacacacacaca--tcaggagggagtaaagaagaga 612
Query: 421 aagtac--------ccccaggtgagaaacaaatatacaatagaatgcatttatgcactaa 472
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 613 aagtactgtggtacccccaggtgagaaacaaatatacaatagaatacatttatgcactaa 672
Query: 473 aggcttgcatagcttagacttgagtggcaattgcatctattgcacattaagctttcaagt 532
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 aggcttgcatggcttagatttgagtggcaattgcatctattgcacattaagctttcaagt 732
Query: 533 tttcagtgctgttaggaatttcttgtttgttttcagcatataaacctaaatgctaatctc 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tttcagtgctgttaggaatttcttgtttgttttcagcatataaacctaaatgctaatctc 792
Query: 593 taacatccaggaaatctaacgagaagattctcactccaaacaggcatgcaggttcttctc 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 taacatccaggaaatctaacgagaagattctcactccaaacaggcatgcaggttcttctc 852
Query: 653 tgctgcac 660
||||||||
Sbjct: 853 tgctgcac 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
