Query= MSMg01no262_a18.b1 MSMg01no262_a18.b1 CHROMAT_FILE:
MSMg01no262_a18.b1 PHD_FILE: MSMg01no262_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:35 2005
(245 letters)
>mm_chr8_104039780_104040424
Length = 645
Score = 458 bits (237), Expect = e-133
Identities = 243/245 (99%)
Strand = Plus / Minus
Query: 1 tgcagacagttgtacactgcctgcagagggtgcagggaattggacctagcacttctacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tgcagacagttgtacactgcctgcagagggtgcagggaattggacctagcacttctacaa 489
Query: 61 gagcaataagtgctcttaactgcagcgacatctagccatctccagtttttggacattaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gagcaataagtgctcttaactgcagcgacatctagccatctccagtttttggacattaaa 429
Query: 121 gtggatctattctaggtgtgcaagtgtgagtgctgaaaaatctgtgataaatccattgcg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 428 gtggatctattctaggtgtgcaagtgtgagtgctgaaaaatctgtgataaatccattgtg 369
Query: 181 aagtaaccatagcaaaatattctgaactacatcaaagcaataattgacctcacaattttg 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 368 aagtaaccatagcaaaatattctgaactacatcaaagtaataattgacctcacaattttg 309
Query: 241 tgacc 245
|||||
Sbjct: 308 tgacc 304
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no262_a18.g1 MSMg01no262_a18.g1 CHROMAT_FILE:
MSMg01no262_a18.g1 PHD_FILE: MSMg01no262_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:35 2005
(603 letters)
>mm_chr8_103869662_103870665
Length = 1004
Score = 1122 bits (580), Expect = 0.0
Identities = 598/604 (99%), Gaps = 1/604 (0%)
Strand = Plus / Plus
Query: 1 atagcacagaaaagaaggaaaagagacagacataaaatcatatttggctgaatgatatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagcacagaaaagaaggaaaagagacagacataaaatcatatttggctgaatgatatat 260
Query: 61 caagccacctgggtcaaaacaatacttagaactcacacaaacaacctgattctgtaaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagccacctgggtcaaaacaatacttagaactcacacaaacaacctgattctgtaaatt 320
Query: 121 tctttctaaattgaagagcagattcctgtgggctttgaaaaagaattcttttctaaatta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctttctaaattgaagagcagattcctgtgggctttgaaaaagaattcttttctaaatta 380
Query: 181 ctgggtaattttctccactccagttgagctatataatcagacatggtcaaaacattgtac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgggtaattttctccactccagttgagctatataatcagacatggtcaaaacattgtac 440
Query: 241 caggagtacaatagaacatgaattcaagcaaaccatgactccatggacctgcagctataa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggagtacaatagaacatgaattcaagcaaaccatgactccatggacctgcagctataa 500
Query: 301 aaggtgatcagagatgagaatggcaagcaggacttggttgatttt-atgtggataaaaat 359
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 aaggtggtcagagatgagaatggcaagcaggacttggttgatttttatgtggataaaaat 560
Query: 360 ctgtaattgcactgtacccatggagtttgtaaatgattgtaatttaaaatatatgttaaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgtaattgcactgtacccatggagtttgtaaatgattgtaatttaaaatatatgttaaa 620
Query: 420 ttgcacatcttactatattaggcttttggaatcattcatgagatgggcttcaaatggtct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgcacatcttactatattaggcttttggaatcattcatgagatgggcttcaaatggtct 680
Query: 480 aatttttactcctagtaataatgacaataaaacaggattcagaaaactggccctaaacat 539
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatttttactcctagtaataatcacaataaaacaggattcagaaaactggccctaaacat 740
Query: 540 taacaatcttatcttcacaggacaagacttaatagcgatcattatttgaaatgcaaattg 599
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 741 aaacaatcttatcttcacaggacaagacttaatagtgatcattatttgaaatggaaattg 800
Query: 600 agca 603
||||
Sbjct: 801 agca 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1004
Length adjustment: 10
Effective length of query: 593
Effective length of database: 994
Effective search space: 589442
Effective search space used: 589442
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
