BAC Information

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BAC

Clone NameMSMg01-262B23
Chromosome8 (Build37)
Map Location 36,701,913 - 36,702,339
singlet/doubletsinglet
Overlap geneMfhas1
Upstream geneDusp4, LOC675578, Tnks, LOC666792, LOC666797, LOC666804, Ppp1r3b, Thex1
Downstream geneLOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e, Lonrf1, EG544878, 6430573F11Rik, Dlc1, LOC100042892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262B23.T7 (MSMg01no262_b23.b1)MSMg01-262B23.TJ (MSMg01no262_b23.g1)
ACCAG404317AG404318
length774730
length of high quality
(start - end)		430 (38 - 467)651 (75 - 725)
definitionCHROMAT_FILE: MSMg01no262_b23.b1 PHD_FILE: MSMg01no262_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:41 2005CHROMAT_FILE: MSMg01no262_b23.g1 PHD_FILE: MSMg01no262_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAC
AGGACCTCCTCCTTCCTGGGCTGCACACAGCAGAGGGGAAGCTGGAAGCT
TTCTCGTTTCTGCTTTCCTAAGGACATGAACCCCATCAGAGCAGCGTGTA
CTCTTACTACCTCACTTAGCTTTACTTGCTTTGTGGCAGGCCATCCACAC
ACAGTCATATTGGAGGCTAGGGCTCTGAGGGGCACACAGGATAGAAGCAG
AGTACGCTTCTAACCTGAGAAGCAGAAGTGCTTTTGAAAAAGACATTTGA
TCAAAGGGGAAAAATTAAAATATGCTCTCTCTAGAATACTACCCAACCTC
AGACTTTATTGTAAAGCTACAGAAATGAAAGTGACTAGCCATATGTTCAA
ATCAAAGAGACCAAACAGAATTAAGAAATATACAAACACAAGAATGGTTG
GCTGGCTGATTTTTGAGAATGCCGTCTTCCCCCCTTTTTTCCTATTTTTT
ACTTTCTCCCTTTCCCTTTCCCGCTCCTCTTCCTTCTTCCTCAACCCTTC
TATTCCCTTCCCCTTTCTTTTTCCTTCTTTCCATCCCCTTTCCTTCTATA
TTTATCCTCTTTTTCCTTCCTTCCCTCTTTCTCCTCTCCGCTACTCCTTT
TTTTTTTCCCTCACCCCCTATCTTCTCCCTTCTCGTCACATCTTTTCCTT
CCCCCTTCCCCCTAATTTTTTCCCTTTCCTCTACTCCTCCCTCCCATCCT
CTCTTCTATCCCTCCTCCCCCTCC

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGAAACTCACACAATATGTACTCATTGATAAGT
GGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATACAATTTGCT
AAACACATGAAACTCAAGAAGAATGAAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_b23.b1 MSMg01no262_b23.b1 CHROMAT_FILE:
MSMg01no262_b23.b1 PHD_FILE: MSMg01no262_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:41 2005
         (430 letters)



>mm_chr8_36701710_36702539
          Length = 830

 Score =  810 bits (419), Expect = 0.0
 Identities = 425/427 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccacaggacctcctccttcctgggctgcacacagcagaggggaagctggaagct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ggaattccacaggacctcctccttcctgggctgcacacagcagaggggaagctggaagct 571

                                                                       
Query: 64  ttctcgtttctgctttcctaaggacatgaaccccatcagagcagcgtgtactcttactac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ttctcgtttctgctttcctaaggacatgaaccccatcagagcagcgtgtactcttactac 511

                                                                       
Query: 124 ctcacttagctttacttgctttgtggcaggccatccacacacagtcatattggaggctag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ctcacttagctttacttgctttgtggcaggccatccacacacagtcatattggaggctag 451

                                                                       
Query: 184 ggctctgaggggcacacaggatagaagcagagtacgcttctaacctgagaagcagaagtg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ggctctgaggggcacacaggatagaagcagagtacgcttctaacctgagaagcagaagtg 391

                                                                       
Query: 244 cttttgaaaaagacatttgatcaaaggggaaaaattaaaatatgctctctctagaatact 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 cttttgaaaaagacatttgatcaaaggggaaaaattaaaatatgctctctctagaatact 331

                                                                       
Query: 304 acccaacctcagactttattgtaaagctacagaaatgaaagtgactagccatatgttcaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 acccaacctcagactttattgtaaagctacagaaatgaaagtgactagccatatgttcaa 271

                                                                       
Query: 364 atcaaagagaccaaacagaattaagaaatatacaaacacaagaatggttggctggctgat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 270 atcaaagagaccaaacagaattaagaaatatacaaacacaagaatggttggttggttgat 211

                  
Query: 424 ttttgag 430
           |||||||
Sbjct: 210 ttttgag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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