BAC Information

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BAC

Clone NameMSMg01-262J20
Chromosome8 (Build37)
Map Location 67,563,189 - 67,563,354
singlet/doubletsinglet
Overlap genenone
Upstream geneTll1, LOC100040989, Cpe, Sc4mol, Klhl2, LOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60
Downstream geneLOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1, LOC100040967, March1, LOC100040986
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262J20.T7 (MSMg01no262_j20.b1)MSMg01-262J20.TJ (MSMg01no262_j20.g1)
ACCAG404666AG404667
length722826
length of high quality
(start - end)
302 (76 - 377)171 (76 - 246)
definitionCHROMAT_FILE: MSMg01no262_j20.b1 PHD_FILE: MSMg01no262_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:18 2005CHROMAT_FILE: MSMg01no262_j20.g1 PHD_FILE: MSMg01no262_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATACCGCGG
AATTCAAGGCCCATTTTCCAACATGATAAAAGCAATCTACAGCAAACCAG
TAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAA
TCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGT
ACTTAAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGC
TACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATG
ATAGTATATATAAGTGACCCTAATTATTCTACCAGAGAACTCCTAAACCT
GATAAACAGCTTCGGTGAATTAGCTGGATATAAAATAAACTCAAACAAGT
CAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGG
GAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGCGT
GACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAATCTC
TGAAGAAAGAAACTAAGGAAGATCTCAGAAGATGGAAAGATCTCCCATGC
TCATGGATTGGCAGGATCAACATTGTAAAAACGGCTATCTTGCCAAAGGG
AATTTACTGATTCAATGCAATCCCCATCAAAATTCCAACTCAATCCTTCA
ACGAATTGGAAGGAGTAATTTG
NTGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTAGCCTGATCAATAAAAGAATTTT
AAAGTAGAATGGATAAAAGGAAGCTCAAGGATCATTTTATTAGAGTTTAA
GGGGAACAAAAGGATAAGACAGGCAAGGTCTAAGTCTTGGAAACTGCCCA
GAAGAGGAGGATGAAGAAGAGGAAAGGGGAGGAGGAGAGGGAGGTATCCC
CTCTTCTTTTCCTCTCCTTCTCTTTTCCTTTCCCCTCCTCTTTCCTCTTT
CTCCCCTTTCGTCCGACCCCTTTTTTTTTTTCTCTCCCNTCCTCCGCTTC
TTTCGCATTTCTTTTTTTCTCCCCCCCCCCCCCCCCTCTTGAATTTTTTC
AATACCTCTTCCCCTTTCTTCTATTCCCCCCCCCTCCTAATACAATCCTC
TTCTCATCCCGCTTTGTCAACATTATATTTCCATTCTTTCTCCCTTCCTC
ATTTACTCTTCTTTACTCCTTTCTTCCTACGTACTCTCTTCTAACCTCCC
TACTTTGTTTATGCTATTTTCCCTATACACTATTTTTATCTTCCCCATTT
CCGTTTTCTTATTAATTTCCTTTGTTATCCTTCATTCTTTACTTCGTTGC
TTATTTTGGTTCAGATCTGCTTCGGTCCATTTATCCCGCCATTACCTTAC
ATGAATCTACCTTCATAATCGAGCGCATTATCTCCTTTTCTCGCACCCAA
TGACGACACCAATTCCGCTCTATCATCCCTCCATCTCTCTTCCTTTCACA
CCACTTTATCTTGTCCTCTACTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_j20.g1 MSMg01no262_j20.g1 CHROMAT_FILE:
MSMg01no262_j20.g1 PHD_FILE: MSMg01no262_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:18 2005
         (171 letters)



>mm_chr8_67562989_67563559
          Length = 571

 Score =  311 bits (161), Expect = 1e-89
 Identities = 166/169 (98%), Gaps = 3/169 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagcctgatcaataaaagaattttaaagtagaatggataaaaggaagctcaaggatcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagcctgatcaataaaagaattttaaagtagaatggataaaaggaagctcaaggatcat 260

                                                                       
Query: 61  tttattagagtttaaggggaacaaaaggataagacaggcaaggtctaagtcttggaaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttattagagtttaaggggaacaaaaggataagacaggcaaggtctaagtcttggaaact 320

                                                            
Query: 121 gcccagaagaggaggatgaagaagaggaaaggggaggaggagagggagg 169
           ||||||||||||||||||||||   ||||||||||||||||||||||||
Sbjct: 321 gcccagaagaggaggatgaaga---ggaaaggggaggaggagagggagg 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 571
Length adjustment: 8
Effective length of query: 163
Effective length of database: 563
Effective search space:    91769
Effective search space used:    91769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)