BAC Information

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BAC

Clone NameMSMg01-262M18
Chromosome8 (Build37)
Map Location 92,711,309 - 92,711,891
singlet/doubletsinglet
Overlap genenone
Upstream geneEG384862
Downstream geneTox3, LOC100041133, Chd9, LOC100041156, EG626231, Rbl2, Aktip, LOC667162, LOC100041222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262M18.T7 (MSMg01no262_m18.b1)MSMg01-262M18.TJ (MSMg01no262_m18.g1)
ACCAG404798AG404799
length755794
length of high quality
(start - end)
587 (37 - 623)96 (70 - 165)
definitionCHROMAT_FILE: MSMg01no262_m18.b1 PHD_FILE: MSMg01no262_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:31 2005CHROMAT_FILE: MSMg01no262_m18.g1 PHD_FILE: MSMg01no262_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCG
CTTACCGTGTGGCTTTACTGCAGGTGCATTGTAAACTGAGGAGCACTTGC
GCACAAATCAGGTGCTTGAATCTTGGTCCTGAAACAGACAGGCAATGTCT
AACACACACACACACACACACGTTTCTACATGGATCTTCTTTCTCAGGAG
TCTGCCTACCTCTAGAAACACACACAGCCATGCACAAGGGTAAGGCAGAA
ACATGCAATGTATGTTGAAAACTCCAAGCAGATGAGAAATAATGACATTC
AACAATGACTCATAGAGGGGCGGTTGAAATGGGCAAAGAGCTTAAATAGA
CATTTCTCCAAAGCAGATATGCAAATAGTCAACAAGCACATGAAAAGATG
CCCAACACCACTAATGACTAGAGATGCTCAAAGTTGAGTACAATATTCTC
TCATAGCCATCATTAGGATGGCCACTCTCTCTAACAAAACAAAACAGAAT
AATGTGCTAGTATCATATGGCAACCCTGGAACCATGGCGACTGCTGATGA
GCTGTATAAGATGGTACACCCAGTCATCAGATTACAAATAGACTTACCTA
CAAGCAGCAGCTGTGCTCCTGTGTAACATACCCAGAGAACTGAAAGCACA
CCAATGTTCATAATAGCTTTTAATAATGCGGCAACCACGTCATATGAATG
GACAAGCAATATGCAGCCCATAAGAACAATAGAATGCCGTACCTTTTACA
GATAA
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGCCTGGAGAATGGTTTGTTCTGTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCCCTCTC
TCTCTCTCTCACTAGCGGGGAAGAACGAACGAGAGAAAAAAGAAAAAAAG
AAGAAAGAGAGAGGGACAAAAGAAAGCAAAGGAAAGAAAAAAAGTGTACA
AAAAAGAAGAGAAAAGGGGAGCGCAAAGAGAAAAATGAGAGAGAAAAAGA
GAGAGAGGATATTTATAGAAGAAAGAAGCGAAAAAAAAAAAGACAAAATG
AGAAGAAAAGACAACACAAAAGAAAAAAGGAAAAAAAAAAAAAAAAAAAG
AAGCCCCCCGGGGACAAAAAAAAAGAAGGAAAGAGGAGAGTAAGAGATAA
GAAAGAGAAAGACAAAAAAAAAAGAAGAAAGAAGGAGAGAAGAGAAAAAG
AACAAGAAAAAGAATAGAAGAAGAGAGAAAGAAAAAAAAGAAAGAAGAAA
AAAAAAAAGGGCAGGAAAAAAGAAAAAAAAAATAGGCAAGCAGGAATAAA
GAACAAAAAGAGAAAAAAAGCAAGGGTAAGAAGCAAAAGGAAAAAAAGGA
ATGAAAAAAATGAAGAATACAAAGAAAGAAGAAAAAGGAGAAAGAAAAAA
AAGGAAGAGGCAGGGAGAGAAACGAAGGGCGAAAGGAAATAAGAATGGAA
CCACCAACAAGGGAAAGAGACGAGAAAACACAAGAGTATAAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_m18.b1 MSMg01no262_m18.b1 CHROMAT_FILE:
MSMg01no262_m18.b1 PHD_FILE: MSMg01no262_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:31 2005
         (587 letters)



>mm_chr8_92711105_92712091
          Length = 987

 Score = 1112 bits (575), Expect = 0.0
 Identities = 581/583 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccgcttaccgtgtggctttactgcaggtgcattgtaaactgaggagcacttgc 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccgcttacagtgtggctttactgcaggtgcattgtaaactgaggagcacttgc 264

                                                                       
Query: 65  gcacaaatcaggtgcttgaatcttggtcctgaaacagacaggcaatgtctaacacacaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcacaaatcaggtgcttgaatcttggtcctgaaacagacaggcaatgtctaacacacaca 324

                                                                       
Query: 125 cacacacacacgtttctacatggatcttctttctcaggagtctgcctacctctagaaaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cacacacacacgtttctacatggatcttctttctcaggagtctgcctacctctagaaaca 384

                                                                       
Query: 185 cacacagccatgcacaagggtaaggcagaaacatgcaatgtatgttgaaaactccaagca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cacacagccatgcacaagggtaaggcagaaacatgcaatgtatgttgaaaactccaagca 444

                                                                       
Query: 245 gatgagaaataatgacattcaacaatgactcatagaggggcggttgaaatgggcaaagag 304
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 gatgagaaataatgacattcaacaatgactcaaagaggggcggttgaaatgggcaaagag 504

                                                                       
Query: 305 cttaaatagacatttctccaaagcagatatgcaaatagtcaacaagcacatgaaaagatg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttaaatagacatttctccaaagcagatatgcaaatagtcaacaagcacatgaaaagatg 564

                                                                       
Query: 365 cccaacaccactaatgactagagatgctcaaagttgagtacaatattctctcatagccat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cccaacaccactaatgactagagatgctcaaagttgagtacaatattctctcatagccat 624

                                                                       
Query: 425 cattaggatggccactctctctaacaaaacaaaacagaataatgtgctagtatcatatgg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cattaggatggccactctctctaacaaaacaaaacagaataatgtgctagtatcatatgg 684

                                                                       
Query: 485 caaccctggaaccatggcgactgctgatgagctgtataagatggtacacccagtcatcag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 caaccctggaaccatggcgactgctgatgagctgtataagatggtacacccagtcatcag 744

                                                      
Query: 545 attacaaatagacttacctacaagcagcagctgtgctcctgtg 587
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 attacaaatagacttacctacaagcagcagctgtgctcctgtg 787


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)