BAC Information

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BAC

Clone NameMSMg01-262P15
Chromosome8 (Build37)
Map Location 34,358,588 - 34,438,730
singlet/doubletdoublet
Overlap geneWrn
Upstream geneEG546052, LOC100042715, LOC628408, EG628412
Downstream genePurg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms, LOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262P15.T7 (MSMg01no262_p15.b1)MSMg01-262P15.TJ (MSMg01no262_p15.g1)
ACCAG404926AG404927
length745733
length of high quality
(start - end)		653 (62 - 714)422 (77 - 498)
definitionCHROMAT_FILE: MSMg01no262_p15.b1 PHD_FILE: MSMg01no262_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:46 2005CHROMAT_FILE: MSMg01no262_p15.g1 PHD_FILE: MSMg01no262_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,358,588 - 34,359,240)(34,438,431 - 34,438,730)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGATCCGCGGAATTCACT
CAGTTTCGCAAAAAATGTTTGTTTTTAAGGTGACCGTTGCTTTAGTCCAA
CAGAATTTTTTAACACTCAGATTTATTGTTATAACATGCTGACCTTATAT
TTGTGGATTTAAGAGGGAAATTCTCTAATGTGCCTTAACTTGAATTCTGG
GGTTGGGGATTGGGGAACATCATTTCTTAAATATTTCTGTAAGGCAAGCA
GGGGACAGAGCTTCATGGCAGAGCTGAGGTTCCTCAGTGGGACAAGAACA
AAGAACAAAGGTTCTTTTTAATGGGAGCTTTGCCTGCATGTGTGTCTATG
CATCATGTGTTTGCATGGTCCCAACAGAGGTCAGAAGGGGCTGTCAAGAG
TCCCTGGAACTGGAGTTACAGTAAGTTGTGGGTGGCAGAAACGCCAGTCT
TCTGGAAGAACAGCCTGGAGTCCTAACTGCTGAGCCATCTGTCAAGCACG
GAGAAGAAACCCCTCCGCTGGGGGCTACAGAGCTTGGCATGTCTGGTAGG
GACTCAGAGGCCGTCAGGGGAAATGGAGGAGTCAGTCCTTCAGCGGCTGG
GAGTAACCATGAAGGACCCGGTGGCTTTAGACCTGCACGCTCGATTTGAG
GATGGGTGAGAAAATATCATCTGAAAAGAAAGACTTTCAGTATACCTTCT
GCTGAGCAAGAAATGATTGTTTTTGGTTTTGCTTGTTTTTTATAT

CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCTCAAGGCCAGCCTGGCTAA
TAAAAAGCTTTATAAATTTTTATTATTTTAAAATAACTTGTTATTAGATT
TTGAATTTAGTTAATAGTTTTAAAAGTTTTTTTTTTGTATCATTTTATGT
GTATGGCTGTCTTTGCCTGCATGTATGTCTCTGTACAACTTATGTGATGT
ATTCCTGAGAGGTGCAGAGGAGGGTATTGGATCTTCTGGAACTGGTGTTA
CACACAGTTGAAAGCTGCCATGTGGGTGCTGGGAATCAAACCTGGGTCCT
CTAGAAGAGCAGCCAATGCTCTTAACTGCTGAGCTATCTTTCCAGCCCTG
AATTTAATTTTGATCTTGATTTTTGCTTATGTTAATATAGACTTTGACAG
TTTAAGGTTGAGCTAAAGTTTGGAGAGTTGATAATTGTGTAGTTTTGTTT
TTCTGCCCCCCCATTTTTTATTATTTTTTCCTCCCCCCCTCTACCGTGCT
ATTAATTATTCTCCTTTTCCCTCCTCCTTACATTTTATATCTTCCCTATT
CCTACACATATTCCCCCCCCCCCCCCCCTCTGTCTTCCTCCTTTTCCTTT
TCAAATCCAACGTATTTTCTATTATTCTTTTTTTTTAAACCCATTCCATT
CCCCCCCTTAATATTTTTATTCTTCTCGCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_p15.b1 MSMg01no262_p15.b1 CHROMAT_FILE:
MSMg01no262_p15.b1 PHD_FILE: MSMg01no262_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:46 2005
         (653 letters)



>mm_chr8_34358388_34359440
          Length = 1053

 Score = 1232 bits (637), Expect = 0.0
 Identities = 649/653 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaatgtttgtttttaaggtgaccgttgctttagtccaacagaattttttaacactcaga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 201 aaaatgtttgtttttaaggtgaccgttgctttagtccaacagaattttttaaaaatcaga 260

                                                                       
Query: 61  tttattgttataacatgctgaccttatatttgtggatttaagagggaaattctctaatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttattgttataacatgctgaccttatatttgtggatttaagagggaaattctctaatgt 320

                                                                       
Query: 121 gccttaacttgaattctggggttggggattggggaacatcatttcttaaatatttctgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccttaacttgaattctggggttggggattggggaacatcatttcttaaatatttctgta 380

                                                                       
Query: 181 aggcaagcaggggacagagcttcatggcagagctgaggttcctcagtgggacaagaacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggcaagcaggggacagagcttcatggcagagctgaggttcctcagtgggacaagaacaa 440

                                                                       
Query: 241 agaacaaaggttctttttaatgggagctttgcctgcatgtgtgtctatgcatcatgtgtt 300
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaacaaaggccctttttaatgggagctttgcctgcatgtgtgtctatgcatcatgtgtt 500

                                                                       
Query: 301 tgcatggtcccaacagaggtcagaaggggctgtcaagagtccctggaactggagttacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcatggtcccaacagaggtcagaaggggctgtcaagagtccctggaactggagttacag 560

                                                                       
Query: 361 taagttgtgggtggcagaaacgccagtcttctggaagaacagcctggagtcctaactgct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taagttgtgggtggcagaaacgccagtcttctggaagaacagcctggagtcctaactgct 620

                                                                       
Query: 421 gagccatctgtcaagcacggagaagaaacccctccgctgggggctacagagcttggcatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagccatctgtcaagcacggagaagaaacccctccgctgggggctacagagcttggcatg 680

                                                                       
Query: 481 tctggtagggactcagaggccgtcaggggaaatggaggagtcagtccttcagcggctggg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctggtagggactcagaggccgtcaggggaaatggaggagtcagtccttcagcggctggg 740

                                                                       
Query: 541 agtaaccatgaaggacccggtggctttagacctgcacgctcgatttgaggatgggtgaga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agtaaccatgaaggacccggtggctttagacctgcacgctcgatttgaggatgggtgaga 800

                                                                
Query: 601 aaatatcatctgaaaagaaagactttcagtataccttctgctgagcaagaaat 653
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaatatcatctgaaaagaaagactttcagtataccttctgctgagcaagaaat 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no262_p15.g1 MSMg01no262_p15.g1 CHROMAT_FILE:
MSMg01no262_p15.g1 PHD_FILE: MSMg01no262_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:46 2005
         (422 letters)



>mm_chr8_34437909_34438730
          Length = 822

 Score =  580 bits (300), Expect = e-170
 Identities = 300/300 (100%)
 Strand = Plus / Minus

                                                                       
Query: 123 gtgtatggctgtctttgcctgcatgtatgtctctgtacaacttatgtgatgtattcctga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 gtgtatggctgtctttgcctgcatgtatgtctctgtacaacttatgtgatgtattcctga 763

                                                                       
Query: 183 gaggtgcagaggagggtattggatcttctggaactggtgttacacacagttgaaagctgc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 gaggtgcagaggagggtattggatcttctggaactggtgttacacacagttgaaagctgc 703

                                                                       
Query: 243 catgtgggtgctgggaatcaaacctgggtcctctagaagagcagccaatgctcttaactg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 catgtgggtgctgggaatcaaacctgggtcctctagaagagcagccaatgctcttaactg 643

                                                                       
Query: 303 ctgagctatctttccagccctgaatttaattttgatcttgatttttgcttatgttaatat 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ctgagctatctttccagccctgaatttaattttgatcttgatttttgcttatgttaatat 583

                                                                       
Query: 363 agactttgacagtttaaggttgagctaaagtttggagagttgataattgtgtagttttgt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 agactttgacagtttaaggttgagctaaagtttggagagttgataattgtgtagttttgt 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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