BAC Information

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BAC

Clone NameMSMg01-263A01
Chromosome8 (Build37)
Map Location 33,364,488 - 33,365,133
singlet/doubletsinglet
Overlap genenone
Upstream geneFut10, LOC666568, 7420700N18Rik, LOC100041329, EG330731, LOC100041340, Nrg1, 2010007E15Rik, EG666589
Downstream geneEG546052, LOC100042715, LOC628408, EG628412, Wrn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263A01.T7 (MSMg01no263_a01.b1)MSMg01-263A01.TJ (MSMg01no263_a01.g1)
ACCAG404945AG404946
length774742
length of high quality
(start - end)
127 (131 - 257)648 (77 - 724)
definitionCHROMAT_FILE: MSMg01no263_a01.b1 PHD_FILE: MSMg01no263_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:48 2005CHROMAT_FILE: MSMg01no263_a01.g1 PHD_FILE: MSMg01no263_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGTCTAAATGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTGTG
TGTGTGTGTGTGTGTGTGTGATTATTCACACATGTAGCAGGTGTGTCAGT
GAATATGCATGTGTGTTTGTGTGTATGTATGGAGGCCAAAGGCCAACCTT
TGTTGCCATTCTTGAGGAGTTACCTAGTTTGACTATTTCTTAACATGGAC
TCTGTTAACAACCTGGAGCTCATCTACTATGTTAATAACCCATTCTTCAT
CCCAGCGTTGTATAATTGTAACCATGATAATTCTTATTGAATAGATTTTT
TACAAATAACTATGTGTTTTTTTTTTTTTTCCAACCCCTTCCCTTTACTA
GATGTAATAGTTATTCCCATATTCTCTTATTCCCCCCCCCAAAAAAAAAA
AATAATCCTTTTTGCCCTGCCAACTATAAATACCCCCTTATCCTATCATC
CTATGCTCTTTCACTTACACTTGCCTACTTTCGTAAATCCTTTCTTTGCT
ACTAATATATTACACTATATCTTCAATTTTTTAATGATTATTATCTTTTT
TTAGTTTGCAGTTTCCGTTACAGTCTTATTTACTAACCTACTCTTTTCTT
TTACTTTCCTATTTTTCTCTTCTCCTTATTCTATTGTATCATTTTTAATA
TTAACTAATTCTCATTTTCCTTGACATATTTTTATATTTTATATAATATC
TTCTACCTTTTCTCTTTTCTTTCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGAAATTCCTAGCCAAATGGATG
GACCTGGAGGGCATCATTCTGAGTGAGGTAACACATTCACAAAGGAACTC
ACACAATATGTACTCACTGATAAGTGGAGATTAGCCCAAAACCTAGGATA
CCCAAGATATAAGATACAATTTGCTAAACACATGAAACTCAAGAAAAATG
AAGACTGAAGTGTGGACACTATGCCCCTCCTTAGAAGTGGGAACAAAACA
CCCATGGAAGGAGTTACAGAGACAAATAAAAATAAATGAAAACTTTTTCA
AAAGCTCTCAGTAATGAGGAAGGCGGCCATTCTTTACTCTGTGCTGTGGT
ATTGTGCAAAGAGAAATACATGGAGTGCAGCTCTCGTATCACTGTAAAGT
CCCTAGTTTATTTCCCTTGCAACTTTGATATGACCTTTTCCAGAGAGACA
TGAATGAATATCTGTTCACCTCTGTTACATCACCAATGACATAGCACATA
ACTGATTGTGCATAAATGTAGCTTAAACAGTGAGTTGATTGTGTTGTTAC
TTATAGGAGCACAGGTGATGAAAAGAACAGCTATGCTGTGGAAATCACAT
CCCAGCATGAGAGATGTTTCATGAAAACTGTATCTCTGAAACTTTCTGTC
CACAACTTCCCAGGCAGCTTGGTCAATCAGAGTCTCCTCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_a01.g1 MSMg01no263_a01.g1 CHROMAT_FILE:
MSMg01no263_a01.g1 PHD_FILE: MSMg01no263_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:48 2005
         (648 letters)



>mm_chr8_33364165_33365212
          Length = 1048

 Score = 1249 bits (646), Expect = 0.0
 Identities = 646/646 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaaattcctagccaaatggatggacctggagggcatcattctgagtgaggtaacacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969 atgaaattcctagccaaatggatggacctggagggcatcattctgagtgaggtaacacat 910

                                                                       
Query: 61  tcacaaaggaactcacacaatatgtactcactgataagtggagattagcccaaaacctag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 tcacaaaggaactcacacaatatgtactcactgataagtggagattagcccaaaacctag 850

                                                                       
Query: 121 gatacccaagatataagatacaatttgctaaacacatgaaactcaagaaaaatgaagact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 gatacccaagatataagatacaatttgctaaacacatgaaactcaagaaaaatgaagact 790

                                                                       
Query: 181 gaagtgtggacactatgcccctccttagaagtgggaacaaaacacccatggaaggagtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gaagtgtggacactatgcccctccttagaagtgggaacaaaacacccatggaaggagtta 730

                                                                       
Query: 241 cagagacaaataaaaataaatgaaaactttttcaaaagctctcagtaatgaggaaggcgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 cagagacaaataaaaataaatgaaaactttttcaaaagctctcagtaatgaggaaggcgg 670

                                                                       
Query: 301 ccattctttactctgtgctgtggtattgtgcaaagagaaatacatggagtgcagctctcg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ccattctttactctgtgctgtggtattgtgcaaagagaaatacatggagtgcagctctcg 610

                                                                       
Query: 361 tatcactgtaaagtccctagtttatttcccttgcaactttgatatgaccttttccagaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tatcactgtaaagtccctagtttatttcccttgcaactttgatatgaccttttccagaga 550

                                                                       
Query: 421 gacatgaatgaatatctgttcacctctgttacatcaccaatgacatagcacataactgat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gacatgaatgaatatctgttcacctctgttacatcaccaatgacatagcacataactgat 490

                                                                       
Query: 481 tgtgcataaatgtagcttaaacagtgagttgattgtgttgttacttataggagcacaggt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tgtgcataaatgtagcttaaacagtgagttgattgtgttgttacttataggagcacaggt 430

                                                                       
Query: 541 gatgaaaagaacagctatgctgtggaaatcacatcccagcatgagagatgtttcatgaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gatgaaaagaacagctatgctgtggaaatcacatcccagcatgagagatgtttcatgaaa 370

                                                         
Query: 601 actgtatctctgaaactttctgtccacaacttcccaggcagcttgg 646
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 actgtatctctgaaactttctgtccacaacttcccaggcagcttgg 324


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)