BAC Information

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BAC

Clone NameMSMg01-263H12
Chromosome8 (Build37)
Map Location 34,017,621 - 34,018,024
singlet/doubletsinglet
Overlap geneLOC100042715
Upstream geneNrg1, 2010007E15Rik, EG666589, EG546052
Downstream geneLOC628408, EG628412, Wrn, Purg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263H12.T7 (MSMg01no263_h12.b1)MSMg01-263H12.TJ (MSMg01no263_h12.g1)
ACCAG405283AG405284
length748763
length of high quality
(start - end)
592 (45 - 636)340 (77 - 416)
definitionCHROMAT_FILE: MSMg01no263_h12.b1 PHD_FILE: MSMg01no263_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:23 2005CHROMAT_FILE: MSMg01no263_h12.g1 PHD_FILE: MSMg01no263_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAGAATATTCTACATCCATACCACACTGACCACACCTGATCTTATC
AGAATTCCAGAAAAGTATCTTATTTGTATTGATTGTTTTCAAACATTTAT
TATCTTACATTTTGCTAACTGCATTTTTATGTCTGATTACTTAAAACATT
GTAACATGGCAAAAGCTCCATGAACAGGTCAGAAGGCAAACCTGTGCCTT
AGTTACTTTCTAAATATGATGCCATGATGAAGCACCCTGACCAAGGCAAC
CTACAATAGAAAGCAATTCAGCAGGCTTGCAGTTTCAGAGGCTTAGAGTC
CATAATGGTGGAGCAGAGGGTTACAGACTGTAAAGCTGGAGCAAAGACAC
GGGAACAGCAGGCAGCTCACATCTCAAACAGCCAACAGGAGGTAGAAGAG
CAAGCACACGAGAAATAGCACGGGGCTTTTTTATTTTTATTAGATATCTT
CTTTATTTACATTTCAGATGTTTTCCCCTTTCTTGATTTCCCCTCCGAAA
ACCCCCTTTCCCCTCCCTCTTCCCCCCTGCTCACCAACCCACCCCAATCC
CACTTCCTGGCCTTGGCATTCCCCTACACTCGGACATAGAACCTTCATAG
GACCAAGGGCCTCTCCTCCCATTGACGACGGACACATCCTCTGCTACATA
TGCAGCTGGAGCCATGAGTCCCACCAAGTGTACTCTTTGGTTGCTGGT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGGTATAATTTGGATATTAGCTC
TCTATCAGATAAAGGGTTAGTGAATATTATTTCCCAATCTGTAGGTTGGC
GTTTGTCCAATTGACAGTGTCCTTTGCCTTACAGAAACTTTTCAGTTTCA
TGAAGTCCCATTGTTGATCTTAAGGCCTGGGCCATTGGTGTTGTTTAGGA
AATTTTTCCCTGTGCTGATGTGTTCAAGGCTCTTTCCCACTTTCTTTTCT
GTTAGATTCAGAGTATCTGGTTTTATGTGGAGTTCCTTGATCCACTTAGA
CTTCAGCTTTGTATAAGGAGATAAAAATGGATCAATTTGCGTCCTTGTAC
ATGCAGACTGCCAGGTACACAAGCAGCATTTGATGAAGATGCTGTCTTTT
TTCCACTGTATGGTTTTGCCTTCCTTGTCAAAGATCAAGTGTCCATAGGT
GTGTGAGTATATTTCTGGGTCTTTGATTCTATTCCATTGATTTACCTGAC
TGTCTCTGTACTGATACCATGTGGACTTTATCTGTATTGCTACTGTAGTA
TAGCTTGAGGTCTTGACTGTGGATTACACACTACGATCGTTTATGATTGA
TAATATGTCTCACTATTTCTGGATCATCAGTTCCAAAAAATGATATTGAA
TGTGTCTATTCTTTCTCAGAGACAAATTTATTGTCATTTTGTTCAATTAT
TTATGATTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_h12.b1 MSMg01no263_h12.b1 CHROMAT_FILE:
MSMg01no263_h12.b1 PHD_FILE: MSMg01no263_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:23 2005
         (592 letters)



>mm_chr8_34017621_34018612
          Length = 992

 Score =  758 bits (392), Expect = 0.0
 Identities = 401/404 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctagaatattctacatccataccacactgaccacacctgatcttatcagaattcc 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gaattctagaatagtctacatccataccacactgaccacacctgatcttatcagaattcc 345

                                                                       
Query: 65  agaaaagtatcttatttgtattgattgttttcaaacatttattatcttacattttgctaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 agaaaagtatcttatttgtattgattgttttcaaacatttattatcttacattttgctaa 285

                                                                       
Query: 125 ctgcatttttatgtctgattacttaaaacattgtaacatggcaaaagctccatgaacagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ctgcatttttatgtctgattacttaaaacattgtaacatggcaaaagctccatgaacagg 225

                                                                       
Query: 185 tcagaaggcaaacctgtgccttagttactttctaaatatgatgccatgatgaagcaccct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 tcagaaggcaaacctgtgccttagttactttctaaatatgatgccatgatgaagcaccct 165

                                                                       
Query: 245 gaccaaggcaacctacaatagaaagcaattcagcaggcttgcagtttcagaggcttagag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 gaccaaggcaacctacaatagaaagcaattcagcaggcttgcagtttcagaggcttagag 105

                                                                       
Query: 305 tccataatggtggagcagagggttacagactgtaaagctggagcaaagacacgggaacag 364
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 104 tccataatggtggagcagagggttagagactgtaaagctggagcaaagacacgggaacag 45

                                                       
Query: 365 caggcagctcacatctcaaacagccaacaggaggtagaagagca 408
           |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 44  cagggagctcacatctcaaacagccaacaggaggtagaagagca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)