Query= MSMg01no263_j24.b1 MSMg01no263_j24.b1 CHROMAT_FILE:
MSMg01no263_j24.b1 PHD_FILE: MSMg01no263_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:35 2005
(297 letters)
>mm_chr8_24071999_24072688
Length = 690
Score = 410 bits (212), Expect = e-119
Identities = 281/328 (85%), Gaps = 41/328 (12%)
Strand = Plus / Minus
Query: 1 attacatgtatttgtgagcatgtgtaggtaaca--ccagaggataacaccgaaggtcttg 58
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 331 attacatgtatttgtgagcatgtgtaggt---aggccagaggataacaccgaaggtcttg 275
Query: 59 atgactctccattttattaaagtgtgtcccttgctgaatctgaagccaccagtttggctt 118
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 274 atgactctccattttattaaagtgtgtcccttgctga----g--gccaccagtttggctt 221
Query: 119 gtcctgctagttagtccc------------------------------cactgggaggct 148
|||||||||| ||||||| ||||||||||||
Sbjct: 220 gtcctgctagctagtccccagatatcccatcgcctcctgcctacagagcactgggaggct 161
Query: 149 gctgtgcctgcctcagtttcctagcttctcccatctgcactctggtcctcagctttccag 208
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 160 gctgtgcctgcctcattttcctggcttctcccatctgcactctggtcctcagctttccaa 101
Query: 209 gcaagcactctgtccactgagccctcctcacatcagtctgtgagttattttaaacacact 268
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 gcaagcactctgtccgctgagccctcctcacatcagtctgtgagttattttaaacacact 41
Query: 269 tcttcatttctaaacatctgggatgctt 296
||||||||||||||||||| ||||||||
Sbjct: 40 tcttcatttctaaacatctaggatgctt 13
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 690
Length adjustment: 9
Effective length of query: 288
Effective length of database: 681
Effective search space: 196128
Effective search space used: 196128
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no263_j24.g1 MSMg01no263_j24.g1 CHROMAT_FILE:
MSMg01no263_j24.g1 PHD_FILE: MSMg01no263_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:35 2005
(675 letters)
>mm_chr8_23917603_23918677
Length = 1075
Score = 1266 bits (655), Expect = 0.0
Identities = 670/675 (99%), Gaps = 2/675 (0%)
Strand = Plus / Plus
Query: 1 ccttcagcatctgcctttattaagtacaatgtaaggaagaccgtgaccactccctcccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ccttcagcatctgcctttattaagtacaatgtaaggaagaccgtgaccactccctcccac 258
Query: 61 agaccagacgcggaaatgtgactttgtataactcgtcctatgctcctcagcacacagaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 agaccagacgcggaaatgtgactttgtataactcgtcctatgctcctcagcacacagaca 318
Query: 121 ccagcctatttttctctgcacactgttccgccttctctctcttgatctattctcttaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ccagcctatttttctctgcacactgttccgccttctctctcttgatctattctcttaggc 378
Query: 181 tgtactcccccc-acgcccagttccccagacagatcttgtaagctccatctgtcctcatt 239
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgtactcccccccacgcccagttccccagacagatcttgtaagctccatctgtcctcatt 438
Query: 240 ctaggattcctcagacagcttataggcgtgtggacctataagaacctcccaactctcaaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 439 ctaggattcctcagacagcttataggcgtgtggacctataagaacctcccaactcccaaa 498
Query: 300 ttcacgtggcagccaaagattttctttttctggcgctatagatttttttt-attttttaa 358
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 499 ttcacgtggcagccaaagattttttttttctggcgctatagatttttttttattttttaa 558
Query: 359 aaagttccttcatagaatagacaaagtaaatattgagaatttcatcaaaaatacaagttc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aaagttccttcatagaatagacaaagtaaatattgagaatttcatcaaaaatacaagttc 618
Query: 419 tttgaaagtgcataatcattgaaaataaccatctgaaacacaaaacaaatcattttgatt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 619 tttgaaagtgcataatcattgaaaataaccatctgaaacacaaaacaaatcatcttgatt 678
Query: 479 gtttacataaccattctgtcttttcagccaagaaagctctagctgttcaaatgtgaacgc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gtttacataaccattctgtcttttcagccaagaaagctctagctgttcaaatgtgaacgc 738
Query: 539 cactagaaaagcgacaatagggagtcccacggagcttttgcgcagcggcggactgggcag 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 cactagaaaagcgacaatagggagtcccacggagcttttgcgcagcggcggactgggcag 798
Query: 599 tgcgctcttggccacggaaggtggcgctgctgagcctgcggggacaggctctctggaccc 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 tgcgctcttggccacggaaggtggcgctgctgagcctgcggggacaggctctctggaccc 858
Query: 659 aaccatcctggctaa 673
|||||||||||||||
Sbjct: 859 aaccatcctggctaa 873
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space: 708225
Effective search space used: 708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
