TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATAAAATTTGACCTTCATGAAAACCAAAAAGACTAAAAAAAAAAAGT
ATATATGATTTTGTTTCTTTACCCGCTAAAGTTATTCCAAGAATTCTGCT
GTTGTGGTCACTACAGGGTTTGTCACTGATGTACTTTCTTACTCATTAGC
AATGTATATAAATTTTGTGGAATTTAGTAGATATGTGCTCTAAACAAATT
ATTACTCAACTGACCTAGCTAGAGTTATCAAACACTTGCCTATCTATATA
TCTGCTGCCTACCTACCTACATATTATCTTTTTGCCACTCCTATTTATCC
ATACATATATATTTTTGTTTCCCCTCGCCCCCCATAGCTTTTAGAGAAAA
CAGAAGACGGTTACTGCCCAAGTGTTTTAACAAAAGGGCCATAGCTCCAG
CCCCTACATTTACAACCCTTTCATGTAGAGGGACAATAGCTCAACAATTG
CCTTGCATTTCATTTATCTTTGGGATTATTTTTATAACCATTCATTAAGA
CAGGTCAAAGATGCAGAGTTTAATTTTGGTTCCCATCTCTCTCTTTTTGC
AATTTTCTTTTCAAAGTTGCTCTGGAAAATTAAATATGCAAAGTGATAGC
CTTTAATATCTTAGCANAGATCAGACAGCTAATGATGATCACGATAGTAC
TATGAGGAAAATTTTCTTGTTTCTGTTCTACAGCTACATAGCCAGCTACC
CN

TCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTGCATAAGTGCTGCTATTACA
TAAACTGCATAAGATCAAGGGAGAGCCAACATCAGCAGGACTGAAGCAGA
GTGATATGACTCAAGTTAGGGTGTGTCTGGCACTTTGCATTTGATGAGTG
GGAACTGCTAGTGGTGTTTATACTTTGTGCAATTCATAGACATTATTCAT
AGTTTTGTTACTATAGTAACTAGGATTTGAATCATGATATTGGGAGTCAA
GTATTCTTTAACTGTGCCTTAGTATCTGGGATTAGGTTCCATGTCACATT
CTTTTTTCTTTCATTTTTTTTTATGCCCCCCCCCCCCATAAAGACTATTT
AACAATTGTGATATTACCACCCCCCAATTTCAAAATAAATTTCATTTACG
ATTAATAATTTAGGACTAGAGTGATGGCTCCGTTGGCAAGAGCACTTCTT
GCTTTTCTAGTGTACCTCAGGTTCCATGTAGGGTGCATCTACTGCATCGA
ATCCCATGTCTTTTGATCTCTCTTATCCCCTTATTTTCAGCCTTTTCCTT
ACTTTCCCTTTCCTTGTTCTTTCCCCCCCTTTTTTCTTTTTTTCCCCCCT
TTTTCCCCCGACTTATTCTTTTTCCCCTTCCTTTCCCCCCTCAATTTTTC
TCTCCCCCTTTCTCTCCTTTTTTCTCCTCTCCTCCGCTTTTGCCTTTTCA
CTCTTTTCCCATTCTCTCTTTCCTCTCTCCCCTTTG

Query= MSMg01no263_m12.b1 MSMg01no263_m12.b1 CHROMAT_FILE:
MSMg01no263_m12.b1 PHD_FILE: MSMg01no263_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:47 2005
         (320 letters)



>mm_chr8_40670579_40671298
          Length = 720

 Score =  576 bits (298), Expect = e-169
 Identities = 310/314 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcataaaatttgaccttcatgaaaaccaaaaagactaaaaaaaaaaagtatatatg 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcataaaatttgatcttcatgaaaaccaaaaagactaaaaaaaaaaagtatatatg 264

                                                                       
Query: 65  attttgtttctttacccgctaaagttattccaagaattctgctgttgtggtcactacagg 124
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attttgtttctttagatgctaaagttattccaagaattctgctgttgtggtcactacagg 324

                                                                       
Query: 125 gtttgtcactgatgtactttcttactcattagcaatgtatataaattttgtggaatttag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtttgtcactgatgtactttcttactcattagcaatgtatataaattttgtggaatttag 384

                                                                       
Query: 185 tagatatgtgctctaaacaaattattactcaactgacctagctagagttatcaaacactt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagatatgtgctctaaacaaattattactcaactgacctagctagagttatcaaacactt 444

                                                                       
Query: 245 gcctatctatatatctgctgcctacctacctacatattatctttttgccactcctattta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcctatctatatatctgctgcctacctacctacatattatctttttgccactcctattta 504

                         
Query: 305 tccatacatatata 318
           ||||||||||||||
Sbjct: 505 tccatacatatata 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no263_m12.g1 MSMg01no263_m12.g1 CHROMAT_FILE:
MSMg01no263_m12.g1 PHD_FILE: MSMg01no263_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:48 2005
         (290 letters)



>mm_chr8_40827565_40828254
          Length = 690

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgcataagtgctgctattacataaactgcataagatcaagggagagccaacatcagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 actgcataagtgctgctattacataaactgcataagatcaagggagagccaacatcagca 427

                                                                       
Query: 61  ggactgaagcagagtgatatgactcaagttagggtgtgtctggcactttgcatttgatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ggactgaagcagagtgatatgactcaagttagggtgtgtctggcactttgcatttgatga 367

                                                                       
Query: 121 gtgggaactgctagtggtgtttatactttgtgcaattcatagacattattcatagttttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gtgggaactgctagtggtgtttatactttgtgcaattcatagacattattcatagttttg 307

                                                                       
Query: 181 ttactatagtaactaggatttgaatcatgatattgggagtcaagtattctttaactgtgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ttactatagtaactaggatttgaatcatgatattgggagtcaagtattctttaactgtgc 247

                                                         
Query: 241 cttagtatctgggattaggttccatgtcacattcttttttctttca 286
           ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cttagtaactgggattaggttccatgtcacattcttttttctttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)