BAC Information

Click to search

BAC

Clone NameMSMg01-263O21
Chromosome8 (Build37)
Map Location 32,015,846 - 32,016,457
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628189
Downstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568, 7420700N18Rik, LOC100041329, EG330731, LOC100041340, Nrg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263O21.T7 (MSMg01no263_o21.b1)MSMg01-263O21.TJ (MSMg01no263_o21.g1)
ACCAG405617AG405618
length728745
length of high quality
(start - end)
516 (76 - 591)612 (78 - 689)
definitionCHROMAT_FILE: MSMg01no263_o21.b1 PHD_FILE: MSMg01no263_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:59 2005CHROMAT_FILE: MSMg01no263_o21.g1 PHD_FILE: MSMg01no263_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGAATACGCGG
AATTCTTACTCTCATTGCATCATTGGTGTAAGAGGAACTTTTGTTTGCCT
GGTGTAATTGTCGTCCTGGAGGCTTGCTCTTTGCAGTTCTTTAGGAATTC
TGACTGGCTGGTTCAACTCAGCTGTTCTGGCTCAAACTTCTCTCCAACCT
GATTCAACCCAGCTTCTCTCAGCTTCTCACTTAACTGTTCTGATTAGCCT
CAAACTAACTCTGGCAATCTCTTCTAACCTTCTGGCTCCTTTTTATTCTC
TGGCTTCACCTGCCTCTGCTGACCTGCACTGAACTGTGTGAACTCACAAA
ACTCAGCTCCACTGCATCGACTCCCCACTGCCTCAACTCCTACCTCACTC
TTGCTACCTTTTCTGTTCTTACCCCCACCTCTTGAGAGCTGGGCATACCC
TATCTCTGAGAGCTGACCGTGCCCTATCTCTGACCCATTCTGTCGGATCT
TTCCCTGATCCATTATTTTGTCCCCTGCCCAATTAAACATCATTGTTTGA
GATGAAAGGCGTGTCTGCATTGTAACTGGATCATACAGACCTAAAAGGCC
TTTGGATGTGATTAAAGCAGACATGCCGCTGGATAAAATGCCTCTACACA
TTAAGAGGTAGCAAAATCTCCAGGAATCCATTGGGAAAAATGTGGTAAGC
AACTCATGAAGTCATATTCTTAAATAGT
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGCAGGCAGGACCAGCGCTAG
TCTCAAATTACTATCTCCTGGTCTTTAGAACATGCAAGAAGAAGGAAGAA
CCTCTTCCTCACATTCCAGGTTTGTCTGGTTAAACATGGTCAATAACTGC
ATTTGTTACCAGTGGGTCCATTGTCTCCTGAAATGCATTGTTGAATCGGG
GATGGAGGAGCTCCATGACAGAGCACTAGACTAACATGGCCAAGACCGGG
GTTAGAATCTTAGCACTTACACACACACACACACACACACACACACACAC
ACACACACACCTAGAAAGGGTTTCAGATGTGTCCAAACCACAGCATGACA
GAAGACTACATGAGCTTTGGAACCGAACATATAATACATTTGGAAAGGCA
AAAGGCACCGCTCTCTGCCCCAAACCATATCCTATATAATTCATGTGTGC
CTCAGAGAACAAACGTGGAAAGAAGCCCGTGTTAATTGACTGGATGACTG
TGCTAGCCAGATGCCTTGCTTTCATAGGCACCTACACACATCCTATAAAT
TCACTGTAGGGACTAAGAAGTAAGAGTCATCTGTACAGTGTCACCAAGCC
TTACTGTACGCTGCCTCTCTGGCCCCCTCCTCTGAATTGTAGCTAGTCGT
TTAGCTACACGTTTCTCCTTCCAATTACTTTTCCTGGTTCCCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_o21.g1 MSMg01no263_o21.g1 CHROMAT_FILE:
MSMg01no263_o21.g1 PHD_FILE: MSMg01no263_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:59 2005
         (612 letters)



>mm_chr8_32015646_32016657
          Length = 1012

 Score = 1114 bits (576), Expect = 0.0
 Identities = 603/612 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagcaggcaggaccagcgctagtctcaaattactatctcctggtctttagaacatgcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagcaggcaggaccagcgctagtctcaaattactatctcctggtctttagaacatgcaa 260

                                                                       
Query: 61  gaagaaggaagaacctcttcctcacattccaggtttgtctggttaaacatggtcaataac 120
           |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 261 gaagaaggaagaacctcttcctcacattccaggtttgtctggctaaacgtggtcaataac 320

                                                                       
Query: 121 tgcatttgttaccagtgggtccattgtctcctgaaatgcattgttgaatcggggatggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcatttgttaccagtgggtccattgtctcctgaaatgcattgttgaatcggggatggag 380

                                                                       
Query: 181 gagctccatgacagagcactagactaacatggccaagaccggggttagaatcttagcact 240
           |||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||
Sbjct: 381 gagctccatgacagagcactagactaacatagccaagacctgggttagaaccttagcact 440

                                                                       
Query: 241 tacacacacacacacacacacacacacacacacacacacacacctagaaagggtttcaga 300
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 tacacacacacacacacacacacaaacacacacacacacacacctagaaagggtttcaga 500

                                                                       
Query: 301 tgtgtccaaaccacagcatgacagaagactacatgagctttggaaccgaacatataatac 360
           ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 501 tgtgtccaaaccacagcatgacagaagactacatgagttttggaactgaacatataatac 560

                                                                       
Query: 361 atttggaaaggcaaaaggcaccgctctctgccccaaaccatatcctatataattcatgtg 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 atttggaaaggcaaaaggcaccgctctctgccccaaaccatatcctgtataattcatgtg 620

                                                                       
Query: 421 tgcctcagagaacaaacgtggaaagaagcccgtgttaattgactggatgactgtgctagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcctcagagaacaaacgtggaaagaagcccgtgttaattgactggatgactgtgctagc 680

                                                                       
Query: 481 cagatgccttgctttcataggcacctacacacatcctataaattcactgtagggactaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagatgccttgctttcataggcacctacacacatcctataaattcactgtagggactaag 740

                                                                       
Query: 541 aagtaagagtcatctgtacagtgtcaccaagccttactgtacgctgcctctctggccccc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aagtaagagtcatctgtacagtgtcaccaagccttactgtacgctgcctctctggccccc 800

                       
Query: 601 tcctctgaattg 612
           ||||||||||||
Sbjct: 801 tcctctgaattg 812


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)