Query= MSMg01no264_a09.b1 MSMg01no264_a09.b1 CHROMAT_FILE:
MSMg01no264_a09.b1 PHD_FILE: MSMg01no264_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:06 2005
(241 letters)
>mm_chr8_8981324_8981966
Length = 643
Score = 420 bits (217), Expect = e-122
Identities = 235/243 (96%), Gaps = 6/243 (2%)
Strand = Plus / Minus
Query: 1 gtagaggtaggggtacctagaaatggg-gtttctatctatgttatcg---ctgtgtattc 56
||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||
Sbjct: 441 gtagaggtaggggtacctagaaatgggtgtttctatctatgttatggaaa--gtgtattc 384
Query: 57 aacagcgttaatactgcaagtttttaaaaccagagctagtacttaactcatgtagcaaaa 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aacagcgttaatactgcaagtttttaaaaccagagctagtacttaactcatgtagcaaaa 324
Query: 117 tttagcaaaacttgctgtgtagtatgtagacattagctagttgtatggtttagtaaatat 176
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tttagcaaaacttgctgtgtagtatgtagacattagctagttgtatggtttagtaaataa 264
Query: 177 gtaaggtattgaaatgatgaaaatcgatacatttgtcctttgcataggagaagcaagaca 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gtaaggtattgaaatgatgaaaatcgatacatttgtcctttgcataggagaagcaagaca 204
Query: 237 caa 239
|||
Sbjct: 203 caa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 643
Length adjustment: 9
Effective length of query: 232
Effective length of database: 634
Effective search space: 147088
Effective search space used: 147088
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no264_a09.g1 MSMg01no264_a09.g1 CHROMAT_FILE:
MSMg01no264_a09.g1 PHD_FILE: MSMg01no264_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:06 2005
(286 letters)
>mm_chr8_8837744_8838429
Length = 686
Score = 530 bits (274), Expect = e-155
Identities = 283/286 (98%)
Strand = Plus / Plus
Query: 1 atgagacatcgcacttgagtctgcagggctgagggaagagggtgcagccgtgacagagca 60
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgagacatcacacctgagtctgcagggctgagggaagagggtgcagccgtgacagagca 260
Query: 61 gaggacgggcacaatgattttcctacagatccccactgtagtcctgacgagaatacaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggacgggcacaatgattttcctacagatccccactgtagtcctgacgagaatacaatg 320
Query: 121 taagagcctgaactgcagacccatttccgaaaatatgtaactctggaactgcacgaaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagagcctgaactgcagacccatttccgaaaatatgtaactctggaactgcacgaaggt 380
Query: 181 gtgtggatattgtcacttccggggtggagcagctgtgatcctggagtgttgtgggtctcg 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtggatgttgtcacttccggggtggagcagctgtgatcctggagtgttgtgggtctcg 440
Query: 241 gttgtgtagttccttgcaggaggaaaggctggagtttactgccttc 286
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttgtgtagttccttgcaggaggaaaggctggagtttactgccttc 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
