BAC Information

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BAC

Clone NameMSMg01-264H07
Chromosome8 (Build37)
Map Location 99,903,272 - 100,063,959
singlet/doubletdoublet
Overlap geneLOC546090
Upstream geneLOC333331
Downstream geneLOC636859, EG384885, LOC100041173, EG636915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264H07.T7 (MSMg01no264_h07.b1)MSMg01-264H07.TJ (MSMg01no264_h07.g1)
ACCAG405999AG406000
length728814
length of high quality
(start - end)
341 (380 - 720)246 (125 - 370)
definitionCHROMAT_FILE: MSMg01no264_h07.b1 PHD_FILE: MSMg01no264_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:38 2005CHROMAT_FILE: MSMg01no264_h07.g1 PHD_FILE: MSMg01no264_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,063,619 - 100,063,959)(99,903,272 - 99,903,511)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATAACATGCTTGCCCTATAATCTAAAATGATGAAAAGTTTTGAAA
GTCAGGCAAAGAACAGGGCAATCATACAAAATGAAAGAGATTAAACAGAG
ATGACAACGACAGGCAGTATTTGATTCAGAGCTGATCAACTTACTATAAA
AACATTAGTTTGGGCTTAGGGAAGACTAATATTAGTAATAACTTTCTGCT
TTTAATGGCTATGTTGTAGTTAATGTAAGATAAATTCCATGTTGTAGATA
TTACACGGTTGTATATTGACAACAAATTCTCAGATGGTTCAAGAAAGGGA
AGTTGTTCTGCTCTTGCACCCGCCCCCCAAACTTGAAATTGCTTCCCAAT
ATTTTCACACTTTAATTTTATTATTGAGAGGAAGATGAAATGCTTAAACT
CTAAGGTGTACTGTAATCTTGGATTCAGACTGAAGGCAATTCCTTAGAGG
TTGTGTGCTATGTACAGATGAATTCCACATCTTTGCCTGATGAGTTTTTG
AATGCGGAATGTTTCCGAGAAGCTCCTGTGATAGACACTTGGTGGGAAGC
TATTTTGGAAGCAGGTGGGGCATAATAGAGGATGTAGGTAACTTGAAGCT
ATGCATTTGAAGGTTATGACTGGCCATATGTCTCTAATTCTTTCACTGAT
ACTTGGTTAGAGCAATGTAAGTCTCTGG
TTTTTTTTATANANANCCNCNNTTACGATTTAATTTTTTTTTTTTTTTAC
TATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGAACAGCTGGGGCTATGTAGAAAG
ATCATTTCAAAACAAAACAAAACCCAGCAATACTGTCATTTATAAATCAG
TTTCCTGTGAGTAACTAAAATCCAACCATTTGCATAGAGAGAGCATGCTG
CCTCTGCTCCTAAAGGGAACATTTAAAGCAGGGGTAAGTTACAAAGGACC
AAAATAAAGTACATGTTCCAAACTGATTCCTTTACATGGTGCTGCTCAGT
TAAAAATAAAACAAAAACAAGATCTAAACAAACAAACAAAAAAACCCTCA
AATCTCTGAGATATTTTTTTTCCATGCCCCCCCCCCACCAAAACTGAAAG
GCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTATCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTTTTTTTCAGGCTGGCCTCGAACTCAGAAATATGC
CTGCCTCTGCTTCCCGAGTGCTGGAATTAAAGGCGTGTGCCACCACAGCC
AGCAGTATATTAATTCTTACTTTCCACACTTCTAGCAAGCTGACTTGCCT
TCCTTACATGATCTGGGTTTCATATTCTTGCAACTTTACCTTTTGTTAGA
GGATTTTTTTGATATGCTTTGTTTAGGTTTGTTTTCAAATCCCACAAACT
CTACCCTTGTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_h07.b1 MSMg01no264_h07.b1 CHROMAT_FILE:
MSMg01no264_h07.b1 PHD_FILE: MSMg01no264_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:38 2005
         (341 letters)



>mm_chr8_100063419_100064159
          Length = 741

 Score =  659 bits (341), Expect = 0.0
 Identities = 341/341 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacttgaaattgcttcccaatattttcacactttaattttattattgagaggaagatgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aacttgaaattgcttcccaatattttcacactttaattttattattgagaggaagatgaa 482

                                                                       
Query: 61  atgcttaaactctaaggtgtactgtaatcttggattcagactgaaggcaattccttagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atgcttaaactctaaggtgtactgtaatcttggattcagactgaaggcaattccttagag 422

                                                                       
Query: 121 gttgtgtgctatgtacagatgaattccacatctttgcctgatgagtttttgaatgcggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gttgtgtgctatgtacagatgaattccacatctttgcctgatgagtttttgaatgcggaa 362

                                                                       
Query: 181 tgtttccgagaagctcctgtgatagacacttggtgggaagctattttggaagcaggtggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgtttccgagaagctcctgtgatagacacttggtgggaagctattttggaagcaggtggg 302

                                                                       
Query: 241 gcataatagaggatgtaggtaacttgaagctatgcatttgaaggttatgactggccatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gcataatagaggatgtaggtaacttgaagctatgcatttgaaggttatgactggccatat 242

                                                    
Query: 301 gtctctaattctttcactgatacttggttagagcaatgtaa 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtctctaattctttcactgatacttggttagagcaatgtaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no264_h07.g1 MSMg01no264_h07.g1 CHROMAT_FILE:
MSMg01no264_h07.g1 PHD_FILE: MSMg01no264_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:38 2005
         (246 letters)



>mm_chr8_99903072_99903717
          Length = 646

 Score =  441 bits (228), Expect = e-128
 Identities = 237/240 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaacagctggggctatgtagaaagatcatttcaaaacaaaacaaaacccagcaatact 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 201 cagaacagctggggctatgtagaaagatcatttcaaaacaaaacaaaacaaagcaatact 260

                                                                       
Query: 61  gtcatttataaatcagtttcctgtgagtaactaaaatccaaccatttgcatagagagagc 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 gtcatttataaatcagtttcctgtgagtaaccaaaatccaaccatttgcatagagagagc 320

                                                                       
Query: 121 atgctgcctctgctcctaaagggaacatttaaagcaggggtaagttacaaaggaccaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgctgcctctgctcctaaagggaacatttaaagcaggggtaagttacaaaggaccaaaa 380

                                                                       
Query: 181 taaagtacatgttccaaactgattcctttacatggtgctgctcagttaaaaataaaacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaagtacatgttccaaactgattcctttacatggtgctgctcagttaaaaataaaacaa 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)