BAC Information

Click to search

BAC

Clone NameMSMg01-265G24
Chromosome8 (Build37)
Map Location 41,591,554 - 41,698,978
singlet/doubletdoublet
Overlap geneCnot7, Vps37a, Mtmr7
Upstream geneMsr1, EG621431, LOC100039072, LOC666959, EG632166, Fgf20, 2900075B16Rik, Zdhhc2
Downstream geneLOC100039179, Adam24, LOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052, LOC384806, Adam39, LOC384808, EG667077, Slc7a2, Pdgfrl, Mtus1, Fgl1, Pcm1, Asah1, Frg1, LOC100039376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265G24.T7 (MSMg01no265_g24.b1)MSMg01-265G24.TJ (MSMg01no265_g24.g1)
ACCAG406701AG406702
length750767
length of high quality
(start - end)
320 (45 - 364)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no265_g24.b1 PHD_FILE: MSMg01no265_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:55 2005CHROMAT_FILE: MSMg01no265_g24.g1 PHD_FILE: MSMg01no265_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,591,554 - 41,591,869)(41,698,692 - 41,698,978)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTACACTAGCACTGATTTTCTTATCATTTTCTGTTGCTATTTTTCA
AACCAGATGTTTGATCATATTATACAAATATAGGCTACCAAGCAGAAGGG
CACCACAATATTGTAACATAGTACAGAATATACTATATATTTTATTTCCA
TACCTGAACAGCAGTAATATGCCCCTGCCTCATACTAGGCGCTTATATCC
TGAAGCTCAGAAGTCATATGAACTCCACAATGGTTATAAATGTGGCAAAC
TTACTTAAAACATTGTGTGTGTGTGTGTATATATAAATTTTAAAAATCCA
AATGCATGGTTCTTGTATTTAAACTTCGCCCACGATGCTGTGTCAAAAGG
ATGGACTCACCTTCACGCACCCCCCTCAGCTATGAAGATTGTAATAATTA
ATGTAGAACTATTTTAACTAAAGAAATAGTTTATACCCAAGATTTGAGGT
AGACATCAGGTTTTGGTAAATATGCAAGCTTCAATACTATTACATTTTCT
GTATGTAGATTAAGAGGTTGAGGATTGCATTGGAATAGCCCTTTAGAGAA
AATGAATTTGAAAAGAAAATAGCCCCAATTTCCCAAGAAATATCTTAGTA
CACGTGGTGAGTATTTAGAATGCAAAGTATGACTGTAATAATAGTTTCTT
CACAGGAATAATAACTATCTTAAACAGTCACAGTAGATTGGAGTTGTAGN

CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATATCCCTGACTGGTGAGTGTTCT
GCTAGGAGGTCAGATGTGCAGAGTGATGGTGTAATGCATGGCACAATATA
GAACACAGCTGAAAACTTTCTTTTTCTGTATTACTGCTGGGTTTTCTTTT
TCTTTTTTTTTTTTTTGGTTTTTTGGTTTTTTTTTGTTTTTTTGTTTTTT
TATACGGCCCATGACAGCTTGGATTGGGGCTGATATGTGTGATGCTTCTT
GGGATATTGAATACCTCTCTTCTCTTTCCTTTAGAAGGCCAAAACAGTCC
CGAGAGTGCCTGCCGTTTTCCACGCCCCCCTCCCCCCCTTGCACATCTTG
TTACTGATTGTCTTAGCCCCCCCCGCCCATCTTTACTCCCTGGTGCAGCT
ATGTATGGGGCCTGCCTCTTCCTTAATTACACTCTGAGTCTCCAAACTCC
CAAGGTTTGTGTGACTGGACAGTTTTGACTAAGGCTGGATTGATGCTGCA
GGCAGACTGGATTCCTCCCTGCTCTCCTGGGAACTGTTCCCTCCCACACC
CCGGTACCTTCATGACACCCACTTACTGTGTAAGCATAGATGTTTTTCCC
CAGTGTTCTAAAAGGATGAATGTTTGCTTGTGACTTGGCTTGGCGCATTC
TATAACATGAATTCCTCCCTTAAAAATTCCCCAGAATGCTTAAAACATGT
TATTTGAAATAAAGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_g24.b1 MSMg01no265_g24.b1 CHROMAT_FILE:
MSMg01no265_g24.b1 PHD_FILE: MSMg01no265_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:55 2005
         (320 letters)



>mm_chr8_41591350_41592069
          Length = 720

 Score =  611 bits (316), Expect = e-179
 Identities = 316/316 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttacactagcactgattttcttatcattttctgttgctatttttcaaaccagat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttacactagcactgattttcttatcattttctgttgctatttttcaaaccagat 264

                                                                       
Query: 65  gtttgatcatattatacaaatataggctaccaagcagaagggcaccacaatattgtaaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtttgatcatattatacaaatataggctaccaagcagaagggcaccacaatattgtaaca 324

                                                                       
Query: 125 tagtacagaatatactatatattttatttccatacctgaacagcagtaatatgcccctgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tagtacagaatatactatatattttatttccatacctgaacagcagtaatatgcccctgc 384

                                                                       
Query: 185 ctcatactaggcgcttatatcctgaagctcagaagtcatatgaactccacaatggttata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcatactaggcgcttatatcctgaagctcagaagtcatatgaactccacaatggttata 444

                                                                       
Query: 245 aatgtggcaaacttacttaaaacattgtgtgtgtgtgtgtatatataaattttaaaaatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatgtggcaaacttacttaaaacattgtgtgtgtgtgtgtatatataaattttaaaaatc 504

                           
Query: 305 caaatgcatggttctt 320
           ||||||||||||||||
Sbjct: 505 caaatgcatggttctt 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no265_g24.g1 MSMg01no265_g24.g1 CHROMAT_FILE:
MSMg01no265_g24.g1 PHD_FILE: MSMg01no265_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:55 2005
         (287 letters)



>mm_chr8_41698317_41699003
          Length = 687

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatccctgactggtgagtgttctgctaggaggtcagatgtgcagagtgatggtgtaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 atatccctgactggtgagtgttctgctaggaggtcagatgtgcagagtgatggtgtaatg 603

                                                                       
Query: 61  catggcacaatatagaacacagctgaaaactttctttttctgtattactgctgggttttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 catggcacaatatagaacacagctgaaaactttctttttctgtattactgctgggttttc 543

                                                                       
Query: 121 tttttcttttttttttttttggttttttggtttttttttgtttttttgtttttttatacg 180
           ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 542 tttttcttttttttttttttgtttttttgttttttttttgtttttttgtttttttatacg 483

                                                                       
Query: 181 gcccatgacagcttggattggggctgatatgtgtgatgcttcttgggatattgaatacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gcccatgacagcttggattggggctgatatgtgtgatgcttcttgggatattgaatacct 423

                                                          
Query: 241 ctcttctctttcctttagaaggccaaaacagtcccgagagtgcctgc 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ctcttctctttcctttagaaggccaaaacagtcccgagagtgcctgc 376


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)