BAC Information

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BAC

Clone NameMSMg01-265O23
Chromosome8 (Build37)
Map Location 129,616,599 - 129,616,720
singlet/doubletsinglet
Overlap genePard3
Upstream geneSlc35f3, LOC668434, 1810063B05Rik, EG619653, Irf2bp2, Tomm20, Rbm34, LOC100043368, Gabarapl2-ps8_1688.1
Downstream geneEG628847
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265O23.T7 (MSMg01no265_o23.b1)MSMg01-265O23.TJ (MSMg01no265_o23.g1)
ACCAG407056AG407057
length876832
length of high quality
(start - end)
63 (286 - 348)122 (210 - 331)
definitionCHROMAT_FILE: MSMg01no265_o23.b1 PHD_FILE: MSMg01no265_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:35 2005CHROMAT_FILE: MSMg01no265_o23.g1 PHD_FILE: MSMg01no265_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTCTTTTTTTTTTTCCCCCNAACCCAANACACGGTACACCTNCCTA
CCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGGAGTTTTCACAGAATGGACTTGGAAGTGGTCCACACCCAGCT
TTAGAATCTGCCTCGGTTTTTGCCCAGATGGCTCGGTGGTTAAGAGCAAA
GACTGGGGCTGGTGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTC
TGAAGGTCCCAGGTGGTGGCTGACAACCACCCATAATGAGATCTGACACC
CTCTTCTGGTGTGTCTGAAGACAGCTACAATGTTCTTCCATATAACAATA
AATTTAAGAACTAAGATAAATATTTATAATTAAACGTTAATAAAAAAAAA
GAGGAAGGACTGTTTTTTATTGATACCCCCCCCCGCCCGGATCACAATCG
ATTTGTAATGAGGATCTGATGCCCCCCTTACAAGAAAAAAAAAAAGAAAA
AAGTTTACGGTTGTAACTATTACTTTAAATATAAATTAAACAAATTCTAT
TAAGAAAAATATATATTTAATAATGCAAGTCTTCTAAAAATCCTGACAAT
ATTAAAGAAAAGTACTCTAACATGAATTCCGGGGCTGGTGGGTTAATCAA
AACAACTTTATTAATTCCCCAGGAACTTTGGTACAAGCAATAAGATCAGG
ACGGGACATTCTGAAGAATCTGAAGGCCAGTACTGTTATCTACCGGATGT
GTAGTGTCCATGGAATGGTAAAGGCATTAATAAAATAAAAAAATCACTGA
TCTTCGTAATATCCTATTGTTTATATTCCACTAATTATACCAATCCTAAT
ATAATGGCACATAAAACAAACCCAGN
TTTTTTTNCCTCCCCTTCCCCCCCTCCNNNNTTTCNTCTTTTTNNNNNTT
CCTATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTGGTGCTCAGGAGCAAGTCGTT
TCTTTAGCAGGCTGAGGTATACCCTGTGTTTTAAGAAACAGTGCCGTGTG
GAGAATTCCACTACCGTGAACCCTTGGCTTTTCTTTTGTCTCTGGCAAGC
TAAAACTCTTTAAGCTTGAGAAGCATCTGTGTGAAAAGAAAATGATAAAC
TGCTTACACCCTCACCCAAACTCCACACCCACACAATTAAGGGGAAAGCT
TACAGGCATCTCCGCTGTTTGTGTTTTTTCCAGCTTTAGGGCAATCCACT
GTACCCAGGATTTTTTTTTTACTCCCCACCCCGCGCTCTGTACTCATGAC
AGGAATCCCTTCTCACAGACTCCTCAAAATCTGCATCAAGGACCCTCTGC
ACAGCCTGCACAGCGTGACATCTGCCATCTGCCTAAAGCGTTAAAAAAGC
CTTACTAGGCCTGTAGACATGTAATGGCCCTGCACCTCATAGCACTTAAT
TGTTCTTACCGGAACCCAGGTTTCAGTTTCCCATTTACCATCATGTTGTG
CTCACCCCTCTATCTGTTGCTTTGACCCCCGCGCGCGTTTCGCTCCATGT
AACGTGCGCTAAAAACTCAATACATTTTTAAAAATGGAAGATATTTTTCT
TTTTTACTTTCCTCGTGTATAAAATATTGTGTCTTTGTTGAGGTACATTC
CTCTGTCGATATACCCATTGCTATGGCACTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_o23.g1 MSMg01no265_o23.g1 CHROMAT_FILE:
MSMg01no265_o23.g1 PHD_FILE: MSMg01no265_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:35 2005
         (122 letters)



>mm_chr8_129616399_129616920
          Length = 522

 Score =  205 bits (106), Expect = 7e-58
 Identities = 118/122 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   actaccgtgaacccttggcttttcttttgtctctggcaagctaaaactctttaagcttga 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 actaccgtgaacccatggcttttcttttgtctctggcaagctaaaactctttaagcttga 263

                                                                       
Query: 61  gaagcatctgtgtgaaaagaaaatgataaactgcttacaccctcacccaaactccacacc 120
           |||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||
Sbjct: 262 gaagcatctgtgtgaaaagaaaatgagaaaccgcttacaccctcacccaaacaccacacc 203

             
Query: 121 ca 122
           ||
Sbjct: 202 ca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 122
Length of database: 522
Length adjustment: 8
Effective length of query: 114
Effective length of database: 514
Effective search space:    58596
Effective search space used:    58596
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)