BAC Information

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BAC

Clone NameMSMg01-266A04
Chromosome8 (Build37)
Map Location 4,790,122 - 4,790,225
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568
Downstream geneLOC669393, EG631359, LOC100039687, LOC436026, Slc10a2, LOC434275, LOC623409, LOC669429
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266A04.T7 (MSMg01no266_a04.b1)MSMg01-266A04.TJ (MSMg01no266_a04.g1)
ACCAG407114AG407115
length834729
length of high quality
(start - end)
111 (46 - 156)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no266_a04.b1 PHD_FILE: MSMg01no266_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:41 2005CHROMAT_FILE: MSMg01no266_a04.g1 PHD_FILE: MSMg01no266_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCGAAAACTCGCCACTGAAACGTGGCAGAATCTTGCTAATTTTC
ACAACACACTTGAAATCATTTTCACTGACAAGAGATCAAGAACACCTGGT
AAAATTTTAAATCACTATCANTAAAAATCAATAGCTGCAAAATTGAATTG
ACTTTTTTATATAAAAATGTTTTAAAATAAATAANCCCAAAATGCCAACA
TAATTGTGACATGTCTTAATTTTATTTTATTCTTGAAAGTTTGATATTTA
TTTCCCCTTACCTTTTCTCCCCAAAAATCACTATTCCCAAAATAATAACA
ACATTCTCAAGGNAANCCTTTTTTTTTTCTCCCCCCCCCCTCNCNNNNNN
CNGCCTCTAAATCCTNNAATCAAAACCCCTTTGGGCCCCACGAACAAANG
AAAAGGGGTTTCTCANNTCTNNNCCCCNNANATNNNCCCCTNNCCTCCNC
CCCGGGGGTTGGGGGGGGTGGGGGGGGCTTNNNTNNNNNCNCNTCTTTTT
CTTNCTCCCGTGTTTTTTTTTGTTTTTGGTCGGGGGGGGTTACCCGCCCC
TACTCCTCGCCNNTTTTNNNNTCCNCTTTATCTGGGGTTGGGTTATGCAA
CTCCCCNCNCCNNNTNNTTTTTNTCTCCTCTCCCGGTTTTTTGGGTCCCC
TCTTCCCTTNTTTTTCNCTCTCCCCCCTTCCCTTCCTCTCCCCTTTCTCC
CCNTTTCCCTTCTCCCCCTCTCTCCCTNCTTCCTCTTCCCTCCCCTTCCC
TCCCTTATATTCCTCTCCTTTTGTTGGTGTGGGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGACCACATGAAGCTCAATAAG
AAGGAAGACCAAATTGTGGGTGCTTCGGTCCTTCTTAGAAGGAGAACAAA
ATACTCATAGGAGCAAATACAGAGATAAAGTGTAGAGCACAAACTAAAGG
AAAGACTACCCAGAAACTGTCCCACCTGGGGACTGATCCCATATACAGTT
ATCAAACCTAGACACTATTGTAGATGCCAAGAAGTGCATGCTGAAAGGAG
CCTGATATGGCTGACTCCTGAGAGGCCCTGCCAGAGCCTTACAAATACAG
AGGCAGATGTTCACAGTCAACCGTTGGACTGAGTGCAGGGTCCCTAATAG
AGGAGTTAGAGAAGGTACTGAAAGAGTTGAAGGGGTTTGCAACCCTATAG
GATGAACAACAATATCAACCAACCAGACCCCCCAGAACTACCAGGGACTA
AGCCATCAACAAAGGAGTATACATGGCTCCAGCTGCATATGTAGCAGAGG
ATAGCCTTGTCAAGCATCAATGGGAAGAGAAGTCCTCAGTCCTATGAAGG
CTCAATATATGCCCCAGTGTAGGGGAATCAAGGGTGGGGAGGTGGAAAGT
GGNTGGNTCNNTCTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTNTT
TTNTTTTTTTTTTNNTTTTTTTTTTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_a04.b1 MSMg01no266_a04.b1 CHROMAT_FILE:
MSMg01no266_a04.b1 PHD_FILE: MSMg01no266_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:41 2005
         (111 letters)



>mm_chr8_4789918_4790428
          Length = 511

 Score =  194 bits (100), Expect = 2e-54
 Identities = 103/104 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcgaaaactcgccactgaaacgtggcagaatcttgctaattttcacaacacac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcgaaaactcgccactgaaacgtggcagaatcttgctaattttcacaacacac 264

                                                       
Query: 65  ttgaaatcattttcactgacaagagatcaagaacacctggtaaa 108
           ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 265 ttgaaatcattttcactgagaagagatcaagaacacctggtaaa 308


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 111
Length of database: 511
Length adjustment: 8
Effective length of query: 103
Effective length of database: 503
Effective search space:    51809
Effective search space used:    51809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)