BAC Information

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BAC

Clone NameMSMg01-266B08
Chromosome8 (Build37)
Map Location 58,109,738 - 58,110,052
singlet/doubletsinglet
Overlap genenone
Upstream geneGm392, LOC100040212, Gm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356
Downstream geneLOC664916, Adam29, Glra3, LOC664812, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266B08.T7 (MSMg01no266_b08.b1)MSMg01-266B08.TJ (MSMg01no266_b08.g1)
ACCAG407168AG407169
length742754
length of high quality
(start - end)
322 (46 - 367)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no266_b08.b1 PHD_FILE: MSMg01no266_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:46 2005CHROMAT_FILE: MSMg01no266_b08.g1 PHD_FILE: MSMg01no266_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTCCTGAATTTCCCATTGATTGTGAGCTTCCCAGTATGCACACAG
GAAAATGTATTTTTTTTTTGTTACACGCAGAGTGTGCTTTTAATTGCTGA
GACATCTTTCCAGCTCTACATGACAGTGTTTTATTGAGAGATTCTTATGC
TCCAAACCACAAGAAAAATGTATTAAATCTCTGGTGGTATTCTTTAGTTC
ATTGAGTTTTTTTTTTATTTATTTATTAATGAAAGACTTTAGGAATCTCT
GTTGATTTGTTTCCAGGTGTTGTCACCTCTAGAGAAGAATTCCTCACTTA
TCATTTCATTCCTTTATATGATACACCCCCTCCCCACGTCAGATTTTTGA
ATAAGCTCATTCTCTATTACCCCCCCCCCAGAAAAATAACGTCATTATTA
GTATAGTTCTCTTTACAACTGATCTCCCATGTATAACAACAAAACCAACA
GACTTCTTACCCGCCACATCTCTTGTGTTTTCAACGCCCAATCCAATTAT
GTTTCCTTCCACCCCTTATCTCATCCTTCCCACCCCTATTTGCCCTCTTA
TTCCCTTATACCGCCTTATTTTGTTGCCCTACCTCTCCCCTTGTTTCTTC
TACACTCGCTACCTCCTTTCTTTTTTTTCCTCCCTCCCTTCTTTCCCCCC
CCCATTTTCTCTCTTATACTTACTTCTCTACATTTTAACACG
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTTGTATGCTTTAAATATGCTTT
AATTATTGGCTTGTTTATTGCCATGTATAAGGAAATTCTTTAAATTTTCT
GTGCAATATATATCAGTGATTGTACTGGCTAATTTTGTGTCAACTTGACA
CAGGCTTCAGTTATCACAGAGAAAGGAGATTCAGTTGAGGAAATGCCTCC
ATGAGATCCAGCTGTAAGGCATTTTCTCAATTAGTGATCAAGGGGGAAAG
GCCCCTTGTGGGTGGGACCATCTCTGTTCTGGTAGTCTTGGTTCCATAAG
AGTGCAGGCTGATTTTTTTTTTCACCCCCCCCCCCCACAGGAACATCCCT
CCATGGCCTCTGCATCAGCTCCCCACCCCGAAAGAAAACCAGTCCTGAAT
TCCTTTGGAGATGAACAGCAGCATGGAAGTGCAAGTCGAATATACCCTTT
CCTCCCCAACTTTTCTCTTGGGCATGATGTCTGTGTACCCACCATATCCC
CCGCACCAACAACCAATGCTATTTTCACTACCGCTTTTCTCCCTGCGACT
TTTTGTACCTGCTTCTTTCAACTCTTTTGTCACTCCCTCTTCCTTTTTCC
CCTCTCTTCATCTCCACCCTCTCTTTCTCCTTTCTTTTCTCCTCTTCTTT
ATATCTCCTTTTTTTTTATCTACGTGACCCCTCTCACGTCTCTTTTTTCT
TCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_b08.b1 MSMg01no266_b08.b1 CHROMAT_FILE:
MSMg01no266_b08.b1 PHD_FILE: MSMg01no266_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:46 2005
         (322 letters)



>mm_chr8_58109642_58110363
          Length = 722

 Score =  561 bits (290), Expect = e-164
 Identities = 310/318 (97%), Gaps = 3/318 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcctgaatttcccattgattgtgagcttcccagtatgcacacaggaaaatgta 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gaattcctcctgaagttaccattgattgtgagcttcccagtatgcacacaggaaaatgta 352

                                                                       
Query: 65  ttttttttttgttacacgcagagtgtgcttttaattgctgagacatctttccagctctac 124
           |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ttttttttttgtaacaagcagagtgtgcttttaattgctgagacatctttccagctctac 292

                                                                       
Query: 125 atgacagtgttttattgagagattcttatgctccaaaccacaagaaaaatgtattaaatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 atgacagtgttttattgagagattcttatgctccaaaccacaagaaaaatgtattaaatc 232

                                                                       
Query: 185 tctggtggtattctttagttcattgagttttttttttatttatttattaatgaaagactt 244
           |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||
Sbjct: 231 tctggtggtattctttagttcattgagtttttttt---tttatttattaatgaaagactt 175

                                                                       
Query: 245 taggaatctctgttgatttgtttccaggtgttgtcacctctagagaagaattcctcactt 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 174 taggaatctctgttgatttgtttccaggtgttgacacctctagagaagaattcctcactt 115

                             
Query: 305 atcatttcattcctttat 322
           ||||||||||||||||||
Sbjct: 114 atcatttcattcctttat 97


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)