BAC Information

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BAC

Clone NameMSMg01-266B16
Chromosome8 (Build37)
Map Location 93,948,478 - 94,127,942
singlet/doubletdoublet
Overlap geneAJ237917
Upstream geneLOC100041133, Chd9, LOC100041156, EG626231, Rbl2, Aktip, LOC667162, LOC100041222, Rpgrip1l
Downstream geneLOC100041254, LOC674324, LOC100040628, Irx3, 4933436C20Rik, Irx5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266B16.T7 (MSMg01no266_b16.b1)MSMg01-266B16.TJ (MSMg01no266_b16.g1)
ACCAG407183AG407184
length748752
length of high quality
(start - end)		279 (436 - 714)289 (76 - 364)
definitionCHROMAT_FILE: MSMg01no266_b16.b1 PHD_FILE: MSMg01no266_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:48 2005CHROMAT_FILE: MSMg01no266_b16.g1 PHD_FILE: MSMg01no266_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,948,478 - 93,948,756)(94,127,654 - 94,127,942)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTGTGCTTTCTTTATTCCACAGGTAGGTCTTTGAAAGTCCTGCTT
TCTGTTATTAGTTGTCATTTCCCACAAGTTTACACAAGTGAAATGATGTA
TATAGTCTTTTAAAATGTTTTTGGCCTGAAAGTCACTTGGCATAATTATT
TTAAGGCTTATCCATATTTTTTGAGTATCAGTAGTTCAGTCCTGTTGTAC
TTTCTTCTCTGTTATGGTATAATTATTATGCATGCAGGTTGCTACATAAT
TATTTAAACCATACACCACTCATTCACTGCATTGAAGTTGCCGCTGTTCA
TCTACAGAATTCTTTCTTTACTCCCCCCTCACCTCAAGAGTCTCTCTTCC
TTCAGCCCCCAGTAACCACCGCTCTACTGTCTGTCTGTATCAATTTTGGT
AGAGTGCCTCAGTTGTAAAAACAAAATTCCTATGAGGTTACAGCTGGCCT
TGTTCAGCTGTTATCAGTCAGCCACAAAGGAATGTTTGCTGAGATTGTCT
TGCCTTAGCAAACAATTCCGGGAAGGAGAGACCACAGACCTGCACATTGT
CCCCCCATGGCTGCATTCGTTTCTCATTCTTAAGCCCCTCATTCGCCTCT
ACAAAATGTTCCAGCTTGATTTTCTCCCCCTTGCAGGCTCCTCCGTTCCA
TTCTCTTTGGAGACAAGTTTCCCCTGGCTGTGTGTGCTAATACCCAGC

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATACTGGGCGATTCTCTGTACTCAA
GTCAATTTTTTGCCCAGATCTAGACTCTGAGGACCGGACAAAAAGCTTGG
CATAGAGGTAGCGGGCCTGTTGTTCCGTTTGTTCTCACTTCACCGTGCCA
ACTCGATGGCCCTGTCTCTACTGCAGAAAGCAGCCAGTTCTGTAACTAGT
CTGTAAGCTCTGCTGCACCACTGAAGGCAACGGATAAGAATTAACAGATA
ACTCCTAAGAGCAAGAAGCTTATTAAGAAGGCAGAACTGCCTGGCTGTGG
TGGTGCACGCCTTTATTTCTAGCACTCACCACCGCTGAGGCAGGCAGATC
TGAGTTCGAGGCCAGCCCGCCCTACAGAGTAAGTTCCAGGATAGCCAGGG
CTACACAGAAAACCCCTGTCTCAAACCAACCAACCAACCAACCAACCAAA
CAAACAAACAAGCTAGAATTGACAGACCCTTGGCAGTTTGAGAGTTTCTG
AAAGTCAACATAACAACGTCTGTGTGGCTGTGTGTGGAGGTCACAGAACA
ACCTCAGATTGTTCTTCAGCTGCACACACCTGGAGCTTATCAACAGGCTT
AGCTGGCCTCAGTGAGCCTTAGGGACCTGCCATTGCTCTGCTTCCCCTGA
GCTGATATGCCAGGCAGGCAGCACCATAATAAGCCTCCTTACCTGTGTTG
CN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_b16.b1 MSMg01no266_b16.b1 CHROMAT_FILE:
MSMg01no266_b16.b1 PHD_FILE: MSMg01no266_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:48 2005
         (279 letters)



>mm_chr8_93948278_93948956
          Length = 679

 Score =  540 bits (279), Expect = e-158
 Identities = 279/279 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtatcaattttggtagagtgcctcagttgtaaaaacaaaattcctatgaggttacagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtatcaattttggtagagtgcctcagttgtaaaaacaaaattcctatgaggttacagct 260

                                                                       
Query: 61  ggccttgttcagctgttatcagtcagccacaaaggaatgtttgctgagattgtcttgcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggccttgttcagctgttatcagtcagccacaaaggaatgtttgctgagattgtcttgcct 320

                                                                       
Query: 121 tagcaaacaattccgggaaggagagaccacagacctgcacattgtccccccatggctgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagcaaacaattccgggaaggagagaccacagacctgcacattgtccccccatggctgca 380

                                                                       
Query: 181 ttcgtttctcattcttaagcccctcattcgcctctacaaaatgttccagcttgattttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcgtttctcattcttaagcccctcattcgcctctacaaaatgttccagcttgattttct 440

                                                  
Query: 241 cccccttgcaggctcctccgttccattctctttggagac 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccccttgcaggctcctccgttccattctctttggagac 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no266_b16.g1 MSMg01no266_b16.g1 CHROMAT_FILE:
MSMg01no266_b16.g1 PHD_FILE: MSMg01no266_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:48 2005
         (289 letters)



>mm_chr8_94127454_94128142
          Length = 689

 Score =  559 bits (289), Expect = e-164
 Identities = 289/289 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atactgggcgattctctgtactcaagtcaattttttgcccagatctagactctgaggacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 atactgggcgattctctgtactcaagtcaattttttgcccagatctagactctgaggacc 430

                                                                       
Query: 61  ggacaaaaagcttggcatagaggtagcgggcctgttgttccgtttgttctcacttcaccg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ggacaaaaagcttggcatagaggtagcgggcctgttgttccgtttgttctcacttcaccg 370

                                                                       
Query: 121 tgccaactcgatggccctgtctctactgcagaaagcagccagttctgtaactagtctgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tgccaactcgatggccctgtctctactgcagaaagcagccagttctgtaactagtctgta 310

                                                                       
Query: 181 agctctgctgcaccactgaaggcaacggataagaattaacagataactcctaagagcaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 agctctgctgcaccactgaaggcaacggataagaattaacagataactcctaagagcaag 250

                                                            
Query: 241 aagcttattaagaaggcagaactgcctggctgtggtggtgcacgccttt 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aagcttattaagaaggcagaactgcctggctgtggtggtgcacgccttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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