Query= MSMg01no266_c18.b1 MSMg01no266_c18.b1 CHROMAT_FILE:
MSMg01no266_c18.b1 PHD_FILE: MSMg01no266_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:53 2005
(319 letters)
>mm_chr8_50181310_50182028
Length = 719
Score = 586 bits (303), Expect = e-172
Identities = 312/315 (99%)
Strand = Plus / Minus
Query: 5 gaattcatacccatttatatttttgtttaataaaaaacctgcccaagatcaggaaaggct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattcatacccatttatatttttgtttaataaaaaacctgcccaagatcaggaaaggct 460
Query: 65 tatatgtgtttgctgaatactccattgtatttagcataataagcgagaaataagatcaca 124
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tatatctgtttgctgaatactccattgtatttagcataataagcgagaaataagatcaca 400
Query: 125 ttcttttttatttcaaggagggtttctgtctctctggtcatctacttaccaccagcctcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ttcttttttatttcaaggagggtttctgtctctctggtcatctacttaccaccagcctcc 340
Query: 185 taatgcttactaaattttagacctattctaagtagcagttatattctgacatttggcttt 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 339 taatgcttactaaattttagacctattctaagtagcagttatattctgacatttggtttt 280
Query: 245 ctcactgattctgccagtgctagactagttgaatattttaatagaaaaatattaggattt 304
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ctcactgattctgccagtactagactagttgaatattttaatagaaaaatattaggattt 220
Query: 305 ctctttattcaaaat 319
|||||||||||||||
Sbjct: 219 ctctttattcaaaat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space: 220100
Effective search space used: 220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no266_c18.g1 MSMg01no266_c18.g1 CHROMAT_FILE:
MSMg01no266_c18.g1 PHD_FILE: MSMg01no266_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:53 2005
(291 letters)
>mm_chr8_50038313_50039003
Length = 691
Score = 458 bits (237), Expect = e-133
Identities = 287/317 (90%), Gaps = 27/317 (8%)
Strand = Plus / Plus
Query: 1 acttcacaaagtcttcttctgagcctcacaagagcacagtggatgtcctctgccatccat 60
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 201 acttcacaaagtcttcttctgagcctcacaggagcacagtggatgtcctctgtcatccat 260
Query: 61 atgcacgcctgaccagttctggaaaccacaatacagtcatagtggacatgcagaagccca 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 atgcacgcctgaccagttctggaaacaacaatacagtcatagtggacatgcagaagccca 320
Query: 121 tggcaaggtagctcaaaatggagctggtgaggtggatagggaacagatggtacaaatact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggcaaggtagctcaaaatggagctggtgaggtggatagggaacagatggtacaaatact 380
Query: 181 gtatgctgggctgaaatgttgattt-ttt-ttta---a---a---attt-ttt------- 221
||||||||||||||||||||||||| ||| |||| | | |||| |||
Sbjct: 381 gtatgctgggctgaaatgttgatttatttatttatttatttatttatttatttatttatt 440
Query: 222 --------tacaaaaagagcactggagtgtgcttacaggactatgatttttgtccagcac 273
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatttatttacaaaaagagcactggagtgtgcttacaggactatgatttttgtccagcac 500
Query: 274 agataatgagctgctta 290
|||||||||||||||||
Sbjct: 501 agataatgagctgctta 517
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
