BAC Information

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BAC

Clone NameMSMg01-266E17
Chromosome8 (Build37)
Map Location 109,673,855 - 109,832,901
singlet/doubletdoublet
Overlap geneCyb5b, LOC100042791, Nfat5
Upstream geneLypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847
Downstream geneNqo1, Nob1, Wwp2, LOC100042812, Psmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266E17.T7 (MSMg01no266_e17.b1)MSMg01-266E17.TJ (MSMg01no266_e17.g1)
ACCAG407324AG407325
length748751
length of high quality
(start - end)		634 (45 - 678)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no266_e17.b1 PHD_FILE: MSMg01no266_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:02 2005CHROMAT_FILE: MSMg01no266_e17.g1 PHD_FILE: MSMg01no266_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,673,855 - 109,674,484)(109,832,616 - 109,832,901)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAATTATTTCGACTTTTAGCAAGGGTCATTTGAAGTAAATCCTAT
TTTAGGCCATTTAGAAACTAAACCAGTGTAGATGAGCCCTGATCACTGAA
GAATTCAGTTAGAGATTGTTTGGTCAGTAGTGGAAGAAACTTTGGACATC
TACCCTTGCCCCAACTGCTGTCCTAAGGCCTTGTACCTAAGAGCCATGGA
GTCCAACGCCACTTGTGATTTACACAGTGGATTGCTGGGCTCACGCCTCT
CTTAGCACACTCTCTTTAACACTCATCCCAAACCTCTGGGCAAGGAAGGT
AGAGGTCACCACGTCCATTTTAATTGTTGAGCCTTTTGGAGCCTAAAGGG
AACCAGTCTGGTTCACACCAAAGCTTGTAACCCCGGGGGCTGCAATTCTG
GATGGGAAGATCAAGGGAAAATGCGGGTCCGGTCATTCGGGGACCCAGGG
TGGCAGGAAGGGAAAAGAGACGCTGGAAACCGGCTCTTTTCTTTTAGGGC
CGGGCCTGCCCATGGGCCGAGCAGAGAGAATGCTCTCCTGTGGTGACACC
TGTCACCCGGCCACGTTTAGGCGCTGGTCCAAAATCACGATATCTGATTG
GCAAGGTTGGAGGGGCTGGTCGACGCCGATTGGCCAGTCGGACGTCGGAC
CAGGTTTACCCGGTTACGGAAGCCGAGGATGACCCATCGCGTCTCGTT

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTTATTTGAGACTAAATCAGAAT
ATAGCCATTAATGAGCAGAAATGAAGGTAAGAATAACCTATCACATAAAA
ATATTAACAATGGTTATTTCTGTGTGAGAGGATTACATACTGTCTCTTCT
AGTTTTTATACTTTATAATTTTCAAAGTAGTCTTTCTGCAATAAAACAAA
ATGCAAAACTTAAGAAGCTGAAGCAGGAGGACAGTCTCCAAAAAACAAAA
CAAGGATGGGGATATAGCTCAGTGGTAGACAGCCTGCTTAGCAGGCACAA
GGCCCTAAATGCATTTATAGTACCCCCCCCCCCCCCAAACAAGAAGTCCT
AAGTTCAATTCCTAGCAACATTTTGCCCCCTACACAAAAATTTCTTGGGG
CTGAGAACTAAGTGGTAGAAGCATTTGCCTAGCACATCTAAGGTTTTAGG
TTCAATTCCAAGCATACACATAACAGCATTTAAAACTTTAATTTGGGGGC
TGGAGAGATGGCTCAGGTTATGAGCACTGGCTACTCTTCCAGAAGACCCT
GGTTCTATTCCCAGAACCTACATGGCAACTCACAATTATCTGTAACAACT
GTCCAGTTTCAGGAGATACTCCCACACAGACATACATGCAAACAAAATAG
CAGTACACATTAAAAAAATAAAAAGGAATCATCNAAAAAGAGCTTAATTT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_e17.b1 MSMg01no266_e17.b1 CHROMAT_FILE:
MSMg01no266_e17.b1 PHD_FILE: MSMg01no266_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:02 2005
         (634 letters)



>mm_chr8_109673651_109674684
          Length = 1034

 Score = 1102 bits (570), Expect = 0.0
 Identities = 615/630 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaattatttcgacttttagcaagggtcatttgaagtaaatcctattttaggcc 64
           |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaattacctagacttttagcaagggtcatttgaagtaaatcctattttaggcc 264

                                                                       
Query: 65  atttagaaactaaaccagtgtagatgagccctgatcactgaagaattcagttagagattg 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atttagaaactaaaacagtgtagatgagccctgatcactgaagaattcagttagagattg 324

                                                                       
Query: 125 tttggtcagtagtggaagaaactttggacatctacccttgccccaactgctgtcctaagg 184
           ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 ttttgtcagtagtggaagaaacttaggacatctacccttgccccaactgctgtcctaagg 384

                                                                       
Query: 185 ccttgtacctaagagccatggagtccaacgccacttgtgatttacacagtggattgctgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccttgtacctaagagccatggagtccaacgccacttgtgatttacacagtggattgctgg 444

                                                                       
Query: 245 gctcacgcctctcttagcacactctctttaacactcatcccaaacctctgggcaaggaag 304
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 445 gctcacgcctctcttagcacactctctttaacacacatcccaaacctctgggcaaggaag 504

                                                                       
Query: 305 gtagaggtcaccacgtccattttaattgttgagccttttggagcctaaagggaaccagtc 364
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtagaggtcaccacacccattttaattgttgagccttttggagcctaaagggaaccagtc 564

                                                                       
Query: 365 tggttcacaccaaagcttgtaaccccgggggctgcaattctggatgggaagatcaaggga 424
           |||   ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgggggacagcaaagcttgtaaccccgggggctgcaattctggatgggaagatcaaggga 624

                                                                       
Query: 425 aaatgcgggtccggtcattcggggacccagggtggcaggaagggaaaagagacgctggaa 484
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaatgcgggtccgttcattcggggacccagggtggcaggaagggaaaagagacgctggaa 684

                                                                       
Query: 485 accggctcttttcttttagggccgggcctgcccatgggccgagcagagagaatgctctcc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 accggctcttttcttttagggccgggcctgcccatgggccgagcagagagaatgctctcc 744

                                                                       
Query: 545 tgtggtgacacctgtcacccggccacgtttaggcgctggtccaaaatcacgatatctgat 604
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgtggtgacacttgtcacccggccacgtttaggcgctggtccaaaatcacgatatctgat 804

                                         
Query: 605 tggcaaggttggaggggctggtcgacgccg 634
           ||||||||||||||||||||||||||||||
Sbjct: 805 tggcaaggttggaggggctggtcgacgccg 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no266_e17.g1 MSMg01no266_e17.g1 CHROMAT_FILE:
MSMg01no266_e17.g1 PHD_FILE: MSMg01no266_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:02 2005
         (286 letters)



>mm_chr8_109832475_109833160
          Length = 686

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttatttgagactaaatcagaatatagccattaatgagcagaaatgaaggtaagaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 agttatttgagactaaatcagaatatagccattaatgagcagaaatgaaggtaagaataa 368

                                                                       
Query: 61  cctatcacataaaaatattaacaatggttatttctgtgtgagaggattacatactgtctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cctatcacataaaaatattaacaatggttatttctgtgtgagaggattacatactgtctc 308

                                                                       
Query: 121 ttctagtttttatactttataattttcaaagtagtctttctgcaataaaacaaaatgcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ttctagtttttatactttataattttcaaagtagtctttctgcaataaaacaaaatgcaa 248

                                                                       
Query: 181 aacttaagaagctgaagcaggaggacagtctccaaaaaacaaaacaaggatggggatata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aacttaagaagctgaagcaggaggacagtctccaaaaaacaaaacaaggatggggatata 188

                                                         
Query: 241 gctcagtggtagacagcctgcttagcaggcacaaggccctaaatgc 286
           ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 187 gctcagtggtagacagcctgcttagcaggcacagggccctaaatgc 142


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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