BAC Information

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BAC

Clone NameMSMg01-266E22
Chromosome8 (Build37)
Map Location 120,519,796 - 120,520,107
singlet/doubletsinglet
Overlap genenone
Upstream genePkd1l2, Bcmo1, Gan, 4933407C03Rik, Plcg2, 4632417N05Rik, Hsd17b2, Mphosph6
Downstream geneCdh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266E22.T7 (MSMg01no266_e22.b1)MSMg01-266E22.TJ (MSMg01no266_e22.g1)
ACCAG407332AG407333
length746962
length of high quality
(start - end)		316 (46 - 361)---
definitionCHROMAT_FILE: MSMg01no266_e22.b1 PHD_FILE: MSMg01no266_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:03 2005CHROMAT_FILE: MSMg01no266_e22.g1 PHD_FILE: MSMg01no266_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGTGCTGACTTCCTTTGGTGATGAATAGCAATGTGGAAGTGTAA
GCTGAATAAATCCTTTCTTTTCCATCTTGCCTTCTTGGTCATGATGTTTG
TGCAGGAATAGGAACCCTCGTTAAGACCCCTTCTTACTAAGACCCCTCTT
GACAACTCACTATGCCACTTGAATGCTTCCTTGAACCTCAACACGCACTG
AGGAGGTTCCGACTTTGTTTTGGTTAGCTTAGGTAATTCTGATGGTGTGC
CATCAGACCTCAGACCAAAGCTGATTCTTGTGTAGCCTTGAATGTGACCC
TATTTTTCTAATCNCTTTGATCTCGANACCGNNTCCTGCACATTCCCCAA
TCAGCTCAAGACTCTTCCCCCCTTCAGAATATNAAACAAAACGATATGCC
GAACTAAAATCATGTTTTTATTATTCTAAGACTGTAGCTGTATAATCCTC
CTTTTGTGGCTCATGTTTTATTACTGAACTAGAGGGGAAAATAAACCATG
TTTATTTTTTTAATGGTAAAGAATGGAAATGTACAAGAACAATTGGCTAG
AACTGGATTCTTGCTTTGTTCATTTCCACCTTACTCTCTCATCCATTTCC
CCATTGCTCCGCCGTGGTGTCTTGCCATTTGTATACCTTACCATGTCATA
ACACATAGTACGGCACACTCCATCAATGCTCAAGTTTATTTCTGAN

ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANNTTTCTTTAAGAAG
CAANAGAACTCCTACCCATTGGGGTTCTGGGTCTTACCCANNTTCCTGAT
TNNTCTGCTTCAGTACAGAAACAGAAAGCACAGGCAGGAAAAGGTATCCC
TATAAATGGATGGGGATGCATGGNNNATGGATGGNNATGGATGGATGGGA
TGGGGATGGATGGNATGNNNGNNNNNNNNGNNNNNNNNNNNNNNNNNNNA
NNTGNNNNNNNNNNNNNNNNGNNGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNGANNNNGTGNNGGGAGTTTTTTTTTTTTATGGGCGCT
CGGAGGGANGCCGGNAAACGGGAAAAAAATTTTTTGGTGGGTTCTCCCAA
AAAACAAGAAGCCCTCTTGAATATTAATTATATTTAGTGTGNGTATTTTT
TTCCCCCCCCCCTATTAAAAAAAAAAAATACACATCCTGGGGGGGGGGGG
GGGGGTGGCCTCTCTTTGTTTCCGCTTGTTTTTCCTTTCTCTCCCCGTCC
TTTCTGCCGCCCTTGTTTTCTCTGTTTTCTTCCCCCCCCCGTCCTGTATT
CGATGGTCTCATAGTCCCTTTTCCCCACCGCGGTAGTCTCTTTTGTTCCG
CCTCGCTTGTCTCCATTCTGCGCTCCTTTCCTCCTCCGCTCATTTTCCGT
TACTCGTTCATACCGCTATCTTTGCTTATTTCTTCATCTACCCCCACACG
CCAATCCGTATACCTCTGCGTCCTCTCCTTCTCCAACTCATATTGTTTCG
CCTTTCTCCTCCATTCCTTTTATTCACTCGCTTTCCTTTGATGTTCTTCG
CCCCCCTCTTGTATATTTCTCCTTTTCTTCCCTCCGCCTAAGCTGTTACA
TTACCTTCGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_e22.b1 MSMg01no266_e22.b1 CHROMAT_FILE:
MSMg01no266_e22.b1 PHD_FILE: MSMg01no266_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:03 2005
         (316 letters)



>mm_chr8_120519592_120520307
          Length = 716

 Score =  580 bits (300), Expect = e-170
 Identities = 309/312 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagtgctgacttcctttggtgatgaatagcaatgtggaagtgtaagctgaataa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagtgctgacttcctttggtgatgaatagcaatgtggaagtgtaagctgaataa 264

                                                                       
Query: 65  atcctttcttttccatcttgccttcttggtcatgatgtttgtgcaggaataggaaccctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atcctttcttttccatcttgccttcttggtcatgatgtttgtgcaggaataggaaccctc 324

                                                                       
Query: 125 gttaagaccccttcttactaagacccctcttgacaactcactatgccacttgaatgcttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttaagaccccttcttactaagacccctcttgacaactcactatgccacttgaatgcttc 384

                                                                       
Query: 185 cttgaacctcaacacgcactgaggaggttccgactttgttttggttagcttaggtaattc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttgaacctcaacacgcactgaggaggttccgactttgttttggttagcttaggtaattc 444

                                                                       
Query: 245 tgatggtgtgccatcagacctcagaccaaagctgattcttgtgtagccttgaatgtgacc 304
           |||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||
Sbjct: 445 tgatggtgtgccatcagacctcagaccaaagctgagacatgtgtagccttgaatgtgacc 504

                       
Query: 305 ctatttttctaa 316
           ||||||||||||
Sbjct: 505 ctatttttctaa 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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