BAC Information

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BAC

Clone NameMSMg01-266N24
Chromosome8 (Build37)
Map Location 108,484,542 - 108,484,860
singlet/doubletsinglet
Overlap geneSlc12a4
Upstream gene2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat
Downstream geneDpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266N24.T7 (MSMg01no266_n24.b1)MSMg01-266N24.TJ (MSMg01no266_n24.g1)
ACCAG407747AG407748
length745750
length of high quality
(start - end)		319 (45 - 363)291 (76 - 366)
definitionCHROMAT_FILE: MSMg01no266_n24.b1 PHD_FILE: MSMg01no266_n24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:47 2005CHROMAT_FILE: MSMg01no266_n24.g1 PHD_FILE: MSMg01no266_n24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTTGTTTGTTTGTTTATTTTTCGAAACAGGGTTTCTCTGTGTAGC
CCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAG
AAATCTGCCTGTCTCTGCCTCCCAGGTGCTGGGATTAAAGGCGTGCGCCA
CCAACGCTGGAATTCTTTCCCTCTCTTTCCACAGGACAGGGTAACCACAG
AGAGAATAGCCCTTTCCTTTGCCCTTTGGACGCCTCCAGAGGAAATGACT
ACTATGACCGGAACCTGGCACTGTTTGAGGTATCTAAGGAGCCATTCAGG
TGTGGTCGTCTGGAAGGTGNNCCTANGGACAAAAACCCTAAGCATCAGGT
TGGNTTCTCTTCCACTCCCGACTGCCAAAACAATGAAACATCCAGGCTAT
GGATCTCATGGCCCTTTCAATACACTTCACCTTCCCAGACCCCCTTGCAA
CCTTACGTCTGTCCTCCAGGGCCAGTATCCTTTGCCTTCCTTGCAGCCCC
TCACCAAGGTGACCACTTCCTCCTCCCCTCCATTCCTAGGGCCTCTCCCA
GCCCATGGCTCTGCTGTGGATAGATTCTTTCCTTTCTCCTTTCCTATTGG
CTCTTCCAGCTGTTACCCTCTGGTTACAGAGGCTTGTTTTCCCTCCAGCC
TCTGTCCCACTCTGCCCTCCATAGCTAGAGCTGCAGGGAATGTGT

ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTGATGATGGGTTTGATTTCT
TTCTTTTTTGTTTTCTGTTTGTTTTGTGTAAGTTGGTGTGTGGGTGTGCG
TGGGTGTGAGTGACAAGGTCTTACATAGTGAGGCTGTTCTCAAACAGACT
ATGTAGCCACAGATGGCCTTGAACTTTTGATTCTCATGCTTCTGTGTCCC
AAGTACTAAGATTATAGGCATGGAGCACTAACGTACAGTGTGTGTGGTGC
TGAGGATCAAACCCAGGGCTTTGACATTTAAGGCGTTCTACCAACTGAGT
TACAACCATAAGCCCTGTTTTTTTTTTACCCCACACCCACGAGCCAGCTA
TAACCATCTCTCTAGATCATCCCAGTGCAGCAATTCAGAGACAAGGACAG
ACGAGGCTTGGCTTTCCTGCTAGCTCATCAGAACACCTACCTCCCTGAAC
CGTGGCAGGAGGCTGAGGCTGCACTGAAAGAAACAGGAGAAAGTGTCAAG
ATCCCTTGACAGGCAACGGAGGCTCAAAGGTCATCTTGCGATCCCACCTC
GAGGACAAGTCAGAGCTCAGTTAGAGGAGATACAGGCTCAGCGCACTTCC
TAGTGCCTGGAGATTGGTTTTTCTGCCTGACCTAACCATGCTTGTTCATT
ATCTACAATGGTACCTTAGAAATAAGACCCCTAGACTCTTTTATATTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_n24.b1 MSMg01no266_n24.b1 CHROMAT_FILE:
MSMg01no266_n24.b1 PHD_FILE: MSMg01no266_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:47 2005
         (319 letters)



>mm_chr8_108484183_108484901
          Length = 719

 Score =  578 bits (299), Expect = e-169
 Identities = 313/319 (98%), Gaps = 3/319 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttttgtttgtttg---tttatttttcgaaacagggtttctctgtgtagccctg 60
           ||||||||||||||||||||   ||| |||||||||||||||||| ||||||||||||||
Sbjct: 678 ggaattcttttgtttgtttgttttttgtttttcgaaacagggtttttctgtgtagccctg 619

                                                                       
Query: 61  gctgtcctggaactcactctgtagaccaggctggcctcaaactcagaaatctgcctgtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gctgtcctggaactcactctgtagaccaggctggcctcaaactcagaaatctgcctgtct 559

                                                                       
Query: 121 ctgcctcccaggtgctgggattaaaggcgtgcgccaccaacgctggaattctttccctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ctgcctcccaggtgctgggattaaaggcgtgcgccaccaacgctggaattctttccctct 499

                                                                       
Query: 181 ctttccacaggacagggtaaccacagagagaatagccctttcctttgccctttggacgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ctttccacaggacagggtaaccacagagagaatagccctttcctttgccctttggacgcc 439

                                                                       
Query: 241 tccagaggaaatgactactatgaccggaacctggcactgtttgaggtatctaaggagcca 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 438 tccagaggaaatgactactatgaccggaacttggcactgtttgaggtatctaaggagcca 379

                              
Query: 301 ttcaggtgtggtcgtctgg 319
           |||||||||||||||||||
Sbjct: 378 ttcaggtgtggtcgtctgg 360


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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