BAC Information

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BAC

Clone NameMSMg01-266P17
Chromosome8 (Build37)
Map Location 77,289,562 - 77,289,711
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666146
Downstream geneIsx, Hmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5, Rasd2, LOC675507, LOC384845, LOC666211, LOC100039229, 1700007B14Rik, LOC666036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266P17.T7 (MSMg01no266_p17.b1)MSMg01-266P17.TJ (MSMg01no266_p17.g1)
ACCAG407826AG407827
length1,084823
length of high quality
(start - end)
---148 (74 - 221)
definitionCHROMAT_FILE: MSMg01no266_p17.b1 PHD_FILE: MSMg01no266_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:55 2005CHROMAT_FILE: MSMg01no266_p17.g1 PHD_FILE: MSMg01no266_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTTGCGTCGCGCGCCCGTGTTCTTCTGGGTTGTGTGGGCGGGGTGCCGGG
TTTCCTCCCTGTGTGTGGTCCGCCCGCGTTTTCTCCCGCGCCCGGGCGCT
TGTCGCGCCGCGGCGGCTGCCCGCCACCGGGGCCGCGCGTGGGGCGGGGG
CGGTGTGCGGNGTTTGTCGTGTGGTGGTTTTCTTTCTCTTCCGTCGCCGG
ACCGGCTGTTGTCGTTCCGTGTACGCCCGCCTGTCGCCACTTTCTCCCTC
GTTTTTGTTCTTCGGTGCCCGTTGCGGCGTCTCCTGGCGGGGCCTCCCGC
GGTCGTTCGTTCGCCGCCCGTCGTGTGTCTCTTCGCGTCCGCTATTCGCT
GTTTCGCGCTTTTATTGTGTTGCTCGGGCCGGCGGGGGCTTGCGTCGGCG
CGACTGGCCTTTTTTGTTTTCTCGCCGCGCGCGTCGCCGCCCTCGTTTTT
GTCGCTGTTCGCGGGCGGCGGTCGGTGGCTCTCGCTGCGGCTCGTTTTGG
GTTCTGTCTCGCGTCTCGTGCGTCGCCGCGCCGTTCTTGTTCTCGGCCCC
GCGCTTGTTGTGTTGTTGCCCCGATTCTCCCGCTTCGTTTGCGGTTGCGC
TTCGGCTCGCCTCGGGTGGCGTGCCTCGCTCAAGTTGGTGTGTCCCCGCC
CTTTGCTGGGGCTACTCCCGTCTCGGTGTGTCGCGTCGTCGTGCCTGTCC
CCCCTTCTCCGGCCCGTATTTTTAGTTTCTGCGCCGCGCCCGGCCTTGGT
CGCTGCGCTCCGCTTGCCTTCCTTTCGCCTCGCTTCCCGCCCCGGTCGTT
TCGTCGCGGAGGCGTGTGTCCCCGCTTTGCGTCTCGCCCCCGTGTCTCGC
GGTTCTTTTCTGCGTCGCGCGCGTTGCGCTCTTCGCGGGCGCTCGGCCGC
TTTGTGCAGGCGCGGCTCGTGCTGTGGCACCGCCGCCCCGCGTTTATGTG
TCGCGTTCGCCTCGTCTCGCGCGTTCCCGCTTTGCGCGCGGCGGTGTCTC
GCGAGCGCCCGCCTCGCGTGTCGCGTCTTGCTGTATTTCGCCCCGCGTAT
ATATTCCCGCGTCGCGCGCGCGCTTTTCCGCGCN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGGTGGATTAGAACCCAGGAGACACTA
GTATTCTCGCTCTCCCTGTCCAAAACCTTGTCTCAAGACTTATTTATGAG
TAAGGCCACACTCCATGAATGGAGTGGATTGAGGTTTTTTTTTTTTTTTG
TTGTTGTTTTTTTTTTGGGGGNNNNTNNNNNTCTTTTTTTTTTTTTTTTT
TNTTTNNTTTTTTTTTTTTTTTCTTTTTTCTTTTTNTTGGTTTATTTNTN
NNNNTNTNTGTTTNNNNNCCTTTTTTTTTTTCCTCTTTCCTTCTTGCCCC
TCCCGCCCTTTTGGGGGTGGGGTTCNANGCGAGAACCCCTTTTTTTTTTT
TTGGGTTGTTTTTNNCCCCCCCCCTGTTAAAAAAAAAAAAAAAAAAAANT
TGGGTGTGGGGGTTTCTCTTTCCTCTTCTTTTCCCCCTCACCCTTATTCC
CTAGGACGATATTTATCTCTCTCTCCCCTCTCTACCCCCTTTTTTTTTTT
TTTTTCTTTTTTTTTCCTTCTTCTTCCCTTCTCCCTCTTTTCCTTTCTTT
TTCTTCCCCTCTTCTTTTCTTTTTCCCTTCTCCCCTTCTTCCCCTCTTTT
TCCTTTTTTTTTCACACATTATACCTCCCCACTCAATTGCTTGTCTTTCC
CACTCTCCTTCTATTTTTCTGCCTTTTCTTCCTCTCTTTCCTTTCGCCCC
CCCTCCCTCTTCTCTCTATAAATATCTCCCCGCCCACTTCTCCCCTTTGT
TCTCTTTTCCATCCCCACTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_p17.g1 MSMg01no266_p17.g1 CHROMAT_FILE:
MSMg01no266_p17.g1 PHD_FILE: MSMg01no266_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:55 2005
         (148 letters)



>mm_chr8_77289401_77289948
          Length = 548

 Score =  224 bits (116), Expect = 1e-63
 Identities = 142/152 (93%), Gaps = 6/152 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggtggattagaacccaggagacactagtattctcgctctccctgtccaaaaccttgtct 60
           |||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 311 tggtcgattataacccaggagacactagtattctcgctctccctgtccaaaagcttgtct 252

                                                                       
Query: 61  caagacttatttatgagtaaggccacactccatgaatggagtggattgaggttttttt-- 118
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  
Sbjct: 251 caagacttatttatgagtaaggccacactccatggatggagtggattgaggtttttttga 192

                                           
Query: 119 tttttt--ttgttgttgttttttttttggggg 148
           ||||||  || || ||||||||||||||||||
Sbjct: 191 ttttttggtt-tt-ttgttttttttttggggg 162


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 548
Length adjustment: 8
Effective length of query: 140
Effective length of database: 540
Effective search space:    75600
Effective search space used:    75600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)