BAC Information

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BAC

Clone NameMSMg01-267D01
Chromosome8 (Build37)
Map Location 98,757,602 - 98,757,722
singlet/doubletsinglet
Overlap genenone
Upstream geneBC016201, Map1lc3-ps6, 1700055M20Rik, Zfp319, AA960436, Mmp15, Gtl3, Csnk2a2, 4933406B17Rik, Ccdc113, 4931432M23Rik, EG546088, LOC100041040, Gins3, LOC547022, Ndrg4, Setd6, Cnot1, LOC100041953, LOC100041088, BC031853, LOC100041972, Got2, LOC667445
Downstream geneLOC333331
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267D01.T7 (MSMg01no267_d01.b1)MSMg01-267D01.TJ (MSMg01no267_d01.g1)
ACCAG407980AG407981
length2,082738
length of high quality
(start - end)
---293 (76 - 368)
definitionCHROMAT_FILE: MSMg01no267_d01.b1 PHD_FILE: MSMg01no267_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:11 2005CHROMAT_FILE: MSMg01no267_d01.g1 PHD_FILE: MSMg01no267_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTGCTGCAGATCGAGTTATCCTGACTTNNTATCACCACCAGCACTCATCT
ACGCGTACTGCTGTTCGTTACGTNCTCACAACACACGATATGATATATAT
CTGCGACTGTAGCGCTCAGACGTATATCTACCATCGAGACGACGTAGTCT
GCTGTATATCATAGTGTAANCATCTAGCGCGTGCGAGTACGGCGCGTGTA
GTCAGTTTTCACCGAGGCGTGTCCAGTCTATACGCAGGAGAAGCAGATAC
AGACTATACGACCAGGNCGTCATACACACACGCGCGCATGATGGTACTNA
TCTTCACTCATTTTGGCGCGTTCTTNGTAACGCGGCGTACCGCAGCTATA
TGCGCTCGTACTACACGTTACGCACGACGCCTGACATAGCATATGATCAG
ACATTATATACTCACTATCTTATNTANCGTGCGCGACNTCAGGCGCGCAC
TGACGCGATGTGCACGCACACGAACACAGTGATCATTGCTACTCTCATCT
NTACGCTCTACTACCACGCATGACANAGTCTCACACGCGCTGCGTCCCAC
TCGACTCGCGCTANACTTACTGATCAGTACTCNCGTCNAGGTCGAGTCTA
CTATATACACGCGATCACGTCTATATCTCACTATCTCATCTCGTCGCCTC
TATATATCNTCTATNANTACTATTACGTAATCGATACACCAGCCGTCGAC
TACGATCGCTTTACTTCCACGCTCCNATCATCATTACCGTGATAGTTATC
ATGTNTATGTATAACTATCANTGGCGATCCGTCTATGTATNTCGCGCGNA
CTCACNTGCTAGCGACGTACCTATTATGCTCGACGCACCCCCATCGTGGC
TGGATGTCATCAGCATCGCGANCGCCTGCCTGANANANTANTCACATAGT
ACGANGACTNATGTAGGCTCGGATCGTGCACGACTAGGAGAGTCGCGATA
TTGTCGAAGTCNCTCGNACACGTCATCAGTCGTAGCGTATNCTATATTTA
TTGTTGATGTNCNGTGACGAGTGTGCGCGACGAGCGCGTCACATCGACAC
TACGTAACGATGNTCACTGATNGNAGGACGGANANTGGTCNGCGAGAGNA
GCGAACGTNGTANATGAAAATNGATAGCTANCGACTGATATGACATGCAT
TGCNGCNTGNACTACCGCACCCACGCNAGACGAGCGTCGTATTANTACTA
TCGACGCTACGGTACAACTNAGCATCACATGACCGTCGAGTATAGTGCAG
AGACGATCATCGATCGCATGAGTCAGACGTCGCCCGACACGTCGGCAGCC
GCAGCGGACGAGACNACTATCGTCGAAATCAACTACGTCGCAGAAGNGTA
GCGCTGGTGCTCGTGACTGCAGCATCGCACACGATCAGACGACACTGAGC
TCTNAGNTACTGTNACTGTCATCAGCGTAGCTCGTTNCGCAGCCCNTAGC
ACAGTTGTATCTACTGCTATATGACTGTATAGCAGATGCTNCGAGTNGTA
AGCTTACGAACAAGACAGCATGATCATAATATATGTATGCTCATAGTCGT
ACTACGACTANTCGCATGGACGAGNCATGTACGCTCAACGTATATATAGA
CGAGAGAGATCACGAATATACGAGCTCGACGNTCTATCGATAAAAGCAAT
AATGAACGCTACTGGTACACACTTCAGNTACACACACGACCTAGCTGNAT
CAGANGTTGATATANGTGTGTATAACTTATATCTAATCACNGATATCACA
GACTAGACTAAGGTGAGTATGATATAGAGTACATCGCAGCGCAATACTGA
TCGAGACTCGTTTAACACTTACTATCGAACACAGCTCAGGTATACTGTCA
GGATCAATTGCGACAAACGTCATAGCATACATCTTNGTATATGATCNCGC
GTNGCTGTCGCGATCGCGCGGCAGATGACATATACGTACTATACGACTTN
GCTGTCTCATACCGACGTCTTATCACANCAACACGCACAGTCTGTATCAC
GTGGTNCGATCGTGGNATCTAGCCGCGCGCGCGATGAGCAGTAACTGGTA
TAGTATATCTGATCGATAATCGACAGCAGAAN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTAGGACTTGGGAGGCTGAGGCAAG
ATGGCAGAGACTTCAGAGGCAGCTTGAACTGTATAGTTAGAGGCTTTCTC
GAAATAAATAAATAAATAAATAAATAACTCAAGTAGCGCATTCAATGACC
AATGGGTAAATAAATAAATAAATAAATAGAAGGAAATGTCTGAAAAACTA
CAAGTGCGATTTAATACATCAGACTCACTAACCATGAAAAGTATAAGTTG
ATGGAAAGGAAGCATTGTCCAGGTCTTGACAGGACCCTTCAAACATTTTC
ATGAGTCTTCCCACCCTTTTTTATTGCACACCCCCCTAACTTGGCTTAAG
CAACGAGCAACATACTGAGGAGGCACTGGGTGAAGATCCTGGAGCTTATA
TTAATTGGGAGCAAAGTAAACAGGGAGGGAGGCTACTTAGGAAATTATGC
CCATAGTGAAAATGTAGGGGTGGCTGATGGACCTAGATAGTAGAACAATT
AGAATGGGGACAGGCAGGATAGTCTCTCTCAGCAAGTGTAGAAGAGACAG
ATAAGGATGCTTATTGGTTAAATTGTGGGTCTATTTGCCTAGAGCTGCAA
CAAGGAGAAGTCAGCGTCATAGTTTAAAAGCCGTGAGTTTTCCCTTTTTT
TCTGGAGAACAGTCTACTAAGTGAAGTTTAAAAGAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_d01.g1 MSMg01no267_d01.g1 CHROMAT_FILE:
MSMg01no267_d01.g1 PHD_FILE: MSMg01no267_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:11 2005
         (293 letters)



>mm_chr8_98757235_98757927
          Length = 693

 Score =  211 bits (109), Expect = 4e-59
 Identities = 118/121 (97%)
 Strand = Plus / Plus

                                                                       
Query: 168 aaaaactacaagtgcgatttaatacatcagactcactaaccatgaaaagtataagttgat 227
           |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 368 aaaaacaacaagtgcgatttaatacatcagactcactgaccatgaaaagtataagttgat 427

                                                                       
Query: 228 ggaaaggaagcattgtccaggtcttgacaggacccttcaaacattttcatgagtcttccc 287
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 428 ggaaaggaagcattgtccaggtcttgacaggacccttcaaacattttcatgagtctcccc 487

            
Query: 288 a 288
           |
Sbjct: 488 a 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)